Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0391 ATGAGTGATCCCTACTACTCCAATGACCTCAATGGTTGGTTTGACCTAAATTCTCCAAACCTTTTCTCTTCCTCATCATCATTATCATCACCATCTTGTTCTAATTACCCACCATTCAATTTCCCTTCTAGTTATCATAATCATAACTTCACAAGTGGCATGATCTCTTTTACTCATCATCATCATCATATGCATCACCAATCTTGTCATCATGATCCTTCATCTCCTCCTCCAAGAGAAGCTCTTCCTCTCCTTAACCTATGCCCTACAAAACGTGAGGATCTTGAAACTTCCTTTAGTTCCATGGAAGTGGACAAAAGGAATAAAGAAAAACCAGTAATTTCTTTGGATCATGAGGATACTACTGTGACTGTGGCTTTGCACTTAGGGCTCCCAAGCACAACAAGTACAACTTCAGTTGATTTACCTTCTTCATCAGAGAAAGAAAATGAAAAAGTTACTGTTGCTTCTACTGAGTATCCATCAAGTAGAATTAATAGGGGTCAGTATTGGATTCCTACCCCATCTCAAATTCTGATTGGTCCAACACAGTTCTCATGCCCTCTTTGTTTCAAGACTTTTAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAGGGACCAGAATCTCTAAGAGGAACACAACCAACAGCAATGCTTAGACTCCCATGTTTTTGTTGTGCACCAGGGTGCAAGAACAACATTGACCATCCAAGAGCAAAGCCACTCAAAGACTTTAGAACCCTTCAAACTCATTACAAGAGAAAGCATGGGATCAAGCCCTTCATGTGTAGAAAATGTTGCAAAGCATTTGCAGTGAGAGGTGATTGGAGAACTCATGAGAAGAACTGTGGAAAGCTTTGGTATTGCTCTTGTGGCTCTGATTTTAAGCATAAAAGGTCTCTTAAGGATCATATCAAAGCATTTGGAAATGGACATAAAGCTTTTGGAATAGATTGTCTTGATCAAGATGATGAAGGTGGCTCTGAAATTGAGCATGAAAGTGAGTCTTTTCATCATAGTTGA 1047 0.3954 MSDPYYSNDLNGWFDLNSPNLFSSSSSLSSPSCSNYPPFNFPSSYHNHNFTSGMISFTHHHHHMHHQSCHHDPSSPPPREALPLLNLCPTKREDLETSFSSMEVDKRNKEKPVISLDHEDTTVTVALHLGLPSTTSTTSVDLPSSSEKENEKVTVASTEYPSSRINRGQYWIPTPSQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCFCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAFGIDCLDQDDEGGSEIEHESESFHHS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0391 348 Gene3D Classic Zinc Finger 267 342 - -
Lal25g0391 348 SUPERFAMILY beta-beta-alpha zinc fingers 56 207 IPR036236 -
Lal25g0391 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 185 212 IPR013087 -
Lal25g0391 348 MobiDBLite consensus disorder prediction 135 159 - -
Lal25g0391 348 ProSitePatterns Zinc finger C2H2 type domain signature. 187 207 IPR013087 -
Lal25g0391 348 Gene3D Classic Zinc Finger 184 207 - -
Lal25g0391 348 PANTHER ZINC FINGER PROTEIN WIP2 1 344 IPR043584 GO:0003700|GO:0010468
Lal25g0391 348 SUPERFAMILY beta-beta-alpha zinc fingers 251 289 IPR036236 -
Lal25g0391 348 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0391 Lal-Chr25 2631289 2634125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0391 79 340 C2H2 Transcription Factor Family AT3G57670 60.323 5.37e-126 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal25g0391 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0391 - - gmx:100789416 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0391 25 2631289 2634125 Lal25g0391 25 2631289 2634125 ECH
Lal20g0246 20 1743025 1745994 Lal25g0391 25 2631289 2634125 ECH
Lal1g1700 1 19447748 19450702 Lal25g0391 25 2631289 2634125 ECH
Lal11g1321 11 16807091 16809747 Lal25g0391 25 2631289 2634125 ECH
Lal25g0391 25 2631289 2634125 Lal10g1050 10 17541850 17544935 LSH