Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0389 ATGGACCATGACAATTCTGGATGCCAAGCTCCCCCAGAAGGTCCTGTATTATGCATTAACAACTGTGGATTTTTTGGAAGTGCAGCTACGATGAACTTGTGTTCTAAGTGCCACAAAGACATGATGCTGAAACAGGAGCATGCCAAACTTGCAGCATCGTCCATTGGGAATATTATGAATGGATCATCAAGCAGCAGTGGAAATGAACCTGTCGTTGCTGCTAATGTGGATATCTCTGTCAATTCAATAGAGCCTAAGATTGTGTGTGCACAATCTTCACTTTCTTCAGGCTCAGAGGAGATTCGTGAAACAAAGCCCAAGGATGGTCCAAAACGTTGCAACAGCTGTAATAAGCGGGTTGGTTTGACAGGATTTAATTGTCGATGTGGTAGCCTTTTTTGTGCTGCACATCGCTACTCAGACAAACATAATTGTCCATTTGATTACCGCACTGCTGCACAGGATGCCATAGCAAAGGCAAACCCAGTTGTTAAGGCTGAGAAGCTTGATAAGATCTAG 519 0.4374 MDHDNSGCQAPPEGPVLCINNCGFFGSAATMNLCSKCHKDMMLKQEHAKLAASSIGNIMNGSSSSSGNEPVVAANVDISVNSIEPKIVCAQSSLSSGSEEIRETKPKDGPKRCNSCNKRVGLTGFNCRCGSLFCAAHRYSDKHNCPFDYRTAAQDAIAKANPVVKAEKLDKI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0389 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Lal25g0389 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Lal25g0389 172 Pfam A20-like zinc finger 17 39 IPR002653 GO:0003677|GO:0008270
Lal25g0389 172 SUPERFAMILY AN1-like Zinc finger 98 167 IPR035896 -
Lal25g0389 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Lal25g0389 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Lal25g0389 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 172 - -
Lal25g0389 172 Gene3D - 3 69 - -
Lal25g0389 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Lal25g0389 172 PANTHER ZINC FINGER AN1 DOMAIN STRESS-ASSOCIATED PROTEIN 1 172 - -
Lal25g0389 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Lal25g0389 172 Gene3D - 88 168 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0389 Lal-Chr25 2621185 2621703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0389 8 172 C2H2 Transcription Factor Family AT3G52800 42.197 5.29e-36 121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0389 25 2621185 2621703 Lal25g0389 25 2621185 2621703 ECH
Lal20g0241 20 1708095 1711427 Lal25g0389 25 2621185 2621703 ECH
Lal1g1703 1 19482788 19483306 Lal25g0389 25 2621185 2621703 ECH