Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0386 ATGGACTCTTCTGCTCTCATGGGTAGTACAATTTTGGAACCTTCTGCTGATTTGGAATTTGAATCTCATGAAGCTGCTTATGCATTTTACAAAGAATATGCCAAGTCTGCAGGGTTTGGTACTGCCAAGTTGAGCAGTCGTCGGTCTAGGGCGTCAAAGGAATTTATTGATGCCAAATTTTCATGTATAAGATATGGTAATAAGCAACAATCTGATGATGCAATTAATCCACGCCCTTCTCCAAAAATTGGTTGTAAGGCAAGTATGCATGTGAAGAGAAGACAAGATGGTAAATGGTATGTCTATTGCTTTGTGAAAGAGCATAATCATGAACTTTTACCTGCTCAAGCTCATTTTTTTCGTAGTCACAGGAGTTCTGATCCACTAAGTAATGATGTTCGGATGCGAAGGCGGAAGAACTCAACTGGAGTTTCTAAGCTATTTAGTGCATATCAAAATGTTGATTGTTTAGAGAACTTTATGAAACATCATGATAAAGGACAAAGTTTGGTTTTAGAAGCAGGACATGCCCAACTGCTTCTTGAACTCTTCATGCACATGCAGGAAGAGAATCCAAAATTCTTCTATGCAGTTGACTTGAATGAAGAGCATCGACTTAGAAATGTATTCTGGGTTGATGCTAAAGGCTTGGAAGATTTTCCTTTCTTTGCTGATGTTGTTTCTCTTGACACAACATATTTTACAAGCAAGTATAAAATACCGTTGGTACTTTTCATTGGAGTAAACCATCATATTCAACCAAAATTGCTTGGTTGTGCATTGGTTGCTGATGAGACCATATATACTTTTGCCTGGTTACTGCAAACATGGTTCATAGCAATGGGGGAACGAGCCCCACAAGTGATTCTCACCGACCAAAACGAGGCTATTAAAGCAGCCGTTGCTGCTGTTCTTCCAGAAACACGTCATTGTTTTTGTTTGTGGCATGTTTTGGAAAAGATACCAAAACATCTTCAATTTTTATGCTCATGGCATGATAGCTTTATGGAAAAGTTTAACAAATGTATATATAAATCATGGACAGAGGAGGAATTTGAAAAGAGATGGTGGAAGTTGGTTGACAGGTTTAACATTAGAGATGATGAATGGGTCCAGTCCTTATATGATGATCGTATGTGTTGGGTGCCCACTTTTCAGAGAGATATTTCTTTTGCTGGCTTGTCTACTAGTTCACGCTCAGATAGTTTAAATTCTTTGTTTGACAACTATGTCCGCATTGATACTTCATTAAAAGAATTTATAGAACAGTACAGAGTGATTCTGGAAGATAGGCATGAAGAGGAAGCCAAAGCAAATTTTGATGCTTGGCATGAAACACCTGAATTGAAGTCTCCTTCCCCTTTTGAAAAACAAATGTTATTGGTTTACACACATGAAATATATAGAAAGTTCCAGGTCGAGGTTTTGGGTGCAGCTGCCTGCCATCTCAAGAAAGAAAATGATGGTCTGACTGCAGCTTATACTGTGAAAGACCTTGAAAATAGTCAAAGCTATGTGGTGGAATGGAACACATCAAACTCAGACATAAGTTGTTCATGTCGCTCGTTTGAATATAAAGGTTATCTCTGTAGACATGCTATTGTAGTTCTACAAATGTCTGGTGTTTTCAGCATCCCACCAAAGTATATATTGCAAAGATGGACAAATGCTGCACTGAGCAGGCATCCTATTGGTGATAAATTGGAAGAGGTTCAATCCAAGGTCCGTCGTTTCAACGATTTATGTAGACGGGCCATAATATTAGGTGAAGAAGGTTCTTTGTCACAAGAAAGTTACTTTATTGCTTTAGGTGCCATAACTGATGCTTTCAAGCGATGCGCAAATTTGAACTCTGTTGAGAACGACGTGAGACCTGATGCCTCAGCTACCCATGTTGTTTCCAATGTTGAAGAAGAGTATCAATCTATTATTGCATCTAACAATAAGGCCCCTGATCCAAGATTGAATGCCAGTAATAAGGCTGTGAGGACTGGCAGGGATATTGTGACTACAGAAAATGATGAAGGAAATCAAGGAAAGGTACTTCAGCTTGAATTAGCGAATGGCAAAGATGCTTTTCAACAAATGGACCTGACTGATCCGAGGTCACATAACGTCATACCTATGCAGTTTCACAGTATGGTGCCAACTCTGTTCCACAATGTCTCGTCAACACCATTTCATCATACCGCAGCTTCAGCTCATTTGCATGATAATCGTCTTCCTCGTTAG 2232 0.392 MDSSALMGSTILEPSADLEFESHEAAYAFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYVYCFVKEHNHELLPAQAHFFRSHRSSDPLSNDVRMRRRKNSTGVSKLFSAYQNVDCLENFMKHHDKGQSLVLEAGHAQLLLELFMHMQEENPKFFYAVDLNEEHRLRNVFWVDAKGLEDFPFFADVVSLDTTYFTSKYKIPLVLFIGVNHHIQPKLLGCALVADETIYTFAWLLQTWFIAMGERAPQVILTDQNEAIKAAVAAVLPETRHCFCLWHVLEKIPKHLQFLCSWHDSFMEKFNKCIYKSWTEEEFEKRWWKLVDRFNIRDDEWVQSLYDDRMCWVPTFQRDISFAGLSTSSRSDSLNSLFDNYVRIDTSLKEFIEQYRVILEDRHEEEAKANFDAWHETPELKSPSPFEKQMLLVYTHEIYRKFQVEVLGAAACHLKKENDGLTAAYTVKDLENSQSYVVEWNTSNSDISCSCRSFEYKGYLCRHAIVVLQMSGVFSIPPKYILQRWTNAALSRHPIGDKLEEVQSKVRRFNDLCRRAIILGEEGSLSQESYFIALGAITDAFKRCANLNSVENDVRPDASATHVVSNVEEEYQSIIASNNKAPDPRLNASNKAVRTGRDIVTTENDEGNQGKVLQLELANGKDAFQQMDLTDPRSHNVIPMQFHSMVPTLFHNVSSTPFHHTAASAHLHDNRLPR 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0386 743 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 2 702 IPR031052 GO:0006355
Lal25g0386 743 PANTHER PROTEIN FAR1-RELATED SEQUENCE 4 2 702 - -
Lal25g0386 743 Pfam SWIM zinc finger 508 539 IPR007527 GO:0008270
Lal25g0386 743 ProSiteProfiles Zinc finger SWIM-type profile. 505 541 IPR007527 GO:0008270
Lal25g0386 743 SMART 26again6 516 543 IPR006564 GO:0008270
Lal25g0386 743 Pfam MULE transposase domain 226 319 IPR018289 -
Lal25g0386 743 Pfam FAR1 DNA-binding domain 29 114 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0386 Lal-Chr25 2606605 2611719 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lal25g0386 MULE 1.5e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0386 - - gmx:100805273 1296.18