Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0368 ATGGATTTTGGAATCAGTGGATCCACTAATGATGAGATTATAGCAAATGCTACTATGGGAGAGGTAAGTAGTAGCATAGCCGATGAAAACAAAACAGATGACAGTTCGTTAGATTTAGCTTGTAAACAAGATGAAGATGATAATATAACTCAAAATTCTTCTGGAGGGGACATAATTCCATCAACAATTCCTGCAGTATCAGTTGTGTCGGCTGATGAGCCTTATGTTGGTCAGGAGTTTGACTCAGAAGCAGCAGCACATGTATTTTATAATGCATATGCCGCAAGTGTTGGATTCATCATGCGTGTTAGTAAACTTTCACGATCAAGGCGTGATGGAACTGCTATTGGGCGGTCTCTTGTTTGCAACAAAGAGGGTTACAAAATTCCTGACAAACGTGAAAAGATTGTGAGGCCAAGAGCAGAGACAAGAGTTGGTTGCAGGGCAATGATTATGCTGAGGAAAGTAAATTCTGGTAAATGGGTTGTTACTAAGTTTGTAAAGGAGCATAAACATCCTCTGGTTCTGTTACCTGTAAAAGGTAGAAAGGGCTTCATTTATGAGCAATATCCGAACGAGCATGATAAAATTCGAGAACTTTCTCAGCAGTTGGCCTTAGAGAAAAGGAGATCTGCAACCTATAAAAGGCATCTTGAATTGTTGTTTGAGCACATAGATGAGCATAATGATAGCCTTTCAAAGAGAATACAGCACATAGTTGACAGTGTAAAGGAGATAGAAACCAAAGAACAAGAGAGTCATAGATAG 768 0.3932 MDFGISGSTNDEIIANATMGEVSSSIADENKTDDSSLDLACKQDEDDNITQNSSGGDIIPSTIPAVSVVSADEPYVGQEFDSEAAAHVFYNAYAASVGFIMRVSKLSRSRRDGTAIGRSLVCNKEGYKIPDKREKIVRPRAETRVGCRAMIMLRKVNSGKWVVTKFVKEHKHPLVLLPVKGRKGFIYEQYPNEHDKIRELSQQLALEKRRSATYKRHLELLFEHIDEHNDSLSKRIQHIVDSVKEIETKEQESHR 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0368 255 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 2 253 - -
Lal25g0368 255 Pfam FAR1 DNA-binding domain 89 175 IPR004330 -
Lal25g0368 255 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 2 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0368 Lal-Chr25 2488592 2491552 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lal25g0368 FAR1 3.2e-29 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0368 - - gmx:100806900 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0368 25 2488592 2491552 Lal10g1069 10 17678316 17691353 LSH
Lal25g0368 25 2488592 2491552 Lal8g0309 8 2070325 2075022 LSH
Lal25g0368 25 2488592 2491552 Lal2g0177 2 1052372 1054689 PCT
Lal2g0177 2 1052372 1054689 Lal25g0368 25 2488592 2491552 PCT