Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0366 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCTCCAGCAACAGTGATTTGTTGTGCAGATGAAGCTGCTTTGTGTGCCAAATGTGATGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGTAAGCATCATAGGCTTCTTCTTCAAACTCTATCAACCAAGCTTCCAAGATGTGACATATGCCAAGATAAGCCAGCTTTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGAATGCGATGAACCGATTCACTCAGCTGGAAGCATTTCTGCAAGCCACCAGCGCTTCCTTGCTACTGGTATCCGAGTTGCGTCGAGTTCTAATTGCACAAAAGACAATGAAGAAAGTCACTCTGAGCCATCTAATAGGAATGCACAACAAGTTTCTGTGGAAGTTCCATCTCAGCAAGTGCCTACCTTCACTTCTGCTTGGGCTGTTGATGACTTATTGGAGTTAACAGACTTTGAATCGCATGACAAAAAGGAATCCTTGCAGTTTGGAGAGCTGGAATGGCTGGAAGAAGTTGGTCATTTTGGTGAACAATTTCCTCATGAAGCTTTGGCTGCAGCTGAAGTTCCTCAGCTTCCAGCAACACATATTTGCAGCAATGTTGTCTCATACAGAACCTCCAAGTCCTACTTGTCTCACAAAAAGCCTAGGATTGAAGTCCAATATAACGATGATGATGACGACGACGAGTTCTTAACTGTGCCTGATCTTGGCTGA 729 0.4348 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHHRLLLQTLSTKLPRCDICQDKPAFIFCVEDRALFCQECDEPIHSAGSISASHQRFLATGIRVASSSNCTKDNEESHSEPSNRNAQQVSVEVPSQQVPTFTSAWAVDDLLELTDFESHDKKESLQFGELEWLEEVGHFGEQFPHEALAAAEVPQLPATHICSNVVSYRTSKSYLSHKKPRIEVQYNDDDDDDEFLTVPDLG 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0366 242 CDD Bbox1_BBX-like 57 98 - -
Lal25g0366 242 MobiDBLite consensus disorder prediction 109 129 - -
Lal25g0366 242 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Lal25g0366 242 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lal25g0366 242 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lal25g0366 242 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lal25g0366 242 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lal25g0366 242 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 242 - -
Lal25g0366 242 CDD Bbox1_BBX-like 5 47 - -
Lal25g0366 242 Gene3D Classic Zinc Finger 1 93 - -
Lal25g0366 242 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0366 Lal-Chr25 2483533 2485975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0366 1 161 Orphan Transcription Factor Family AT1G06040 62.353 8.62e-68 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal25g0366 zf-B_box 3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0366 - - vun:114183169 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0366 25 2483533 2485975 Lal8g0308 8 2067235 2069726 LSH
Lal25g0366 25 2483533 2485975 Lal2g0174 2 1038706 1045638 PCT
Lal25g0366 25 2483533 2485975 Lal9g0184 9 1144204 1149069 PCT
Lal2g0174 2 1038706 1045638 Lal25g0366 25 2483533 2485975 PCT
Lal9g0184 9 1144204 1149069 Lal25g0366 25 2483533 2485975 PCT