Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0354 ATGCAATACCCTTATTCCCCTAAAGGAAGAGGAAATGGGTACCAGTCTTCTCCTAGATCTCAATTGGAGGGATCAACTTCATTAGATAGTAGAATGAGCAATTCAATTTCAGAGAGTATACCTAACAGCTTCTCTGAGCTCTTGAACCTTGATGCTTACTTGTGCCATAGCCCTTCCATGACTGATCAGATTTTGGGTAACTGGCTTCCATCGTTTGCCTCAGTACCATATCCATCACCCGATAGATTCAACCTAATGGAACAGAACTGTGGGAAATTCTATACGACAGAGGTTAATGGAAATTGCAGTACTACAGAAACCTTGCCTAGTTATGGGGAGAGAGCTGTGTTTCAGCAAATGGACAACCTGCCTGGTTTCTCAGATGATGCAAATAACTTAAATCCTAAGCAAAAAGTTAATGGCTCTGCTCAAAATCACAATACCCTTGATATGGGAAATTACTTGATTCCCAGGCCACCTGGTTTGTCACTTGATGAGAGAATGCTGAGGGCACTGTCCTTCTTTAAGGCATCAGCTGGTGAGGGAATTTTGGCACAAGTTTGGGTACCAATAAAACATGGTGATCAATTCATTTTAACAACGAGTGAGCAACCTTATTTGCTAGACCAAATGCTTTCAGGGTATCGTGAAGTGTCAAGGACATTCACATTTTCTGTAGGAAAATTGGGTTCTATCCCGGGACTTCCTGGTCGTGTGTTTAACTCCAAAGTTCCTGAGTGGACTTCCAATGTTGGTTATTACAATAAGGCTGAGTACTTGAGGGTGGAGCATGCAATTAATCACGAGGTCCGTGGATCAATTGCTTTTCCCATATCTGATGTGCACTCTGAACTACCGTGCTGTGCTGTATTGGAACTGGTCACTACAACAGAAAAGCCTGATTTTAACAGTGAATTGGAACTTGTTTGTCATGCGCTCAAACTTGTAAATTTAAGGACTACTATGCCTCCACGACTTATTTCTAAGTGTCTTTCAAACAACAAAAGAGATGCTTTAACAGAGATAACTGATGTGTTACGATCTGTGTGTCATGCACATAGATTGCCACTGGCACTGACATGGATTCCTTGTTCTTATACTGAGGGCACAGAAGTTGAAGCTACAAGGATACAAATTAAAGAGGGTCATTCAAGTTCTAGTGAAAAAAGCATACTGTGCATCGAAGAGTCAGCTTGCTATATAACTGATAGAGCACTAGAAGGATTTGTTCAAACATGCATTCAACATCATCTTGAGGAAGGGAAAGGTATAGCTGGGAAAGCTCTACAATCAAACCATCCTTTTTTCTGTCCTGATGTGAAGGACTATGACATTAGTGAATACCCACTTGTCCACCATGCCCGCAAATATAACTTGAATGCTGCAGTTGCAATTAAGCTAAGGAGCACTTATACTAATGACGATGATTACATTTTGGAATTCTTTCTGCCTGTTACTGTGAGAGGGAGTTTAGAGCAACAACTTTTATTAGACAGTCTCTCGGTCACCATGCAGAAAATGTGTAGGAGTTTGAGGACAGTTTCAGATGCTGAATCACCAGGAACAAAAAACTCACAAACGGGATATGAAAATAAAAATATATTCAGTTTTTCCCCTATGTCTAGGAGAAACTCTCAAATACCACTAGTAAGCGGTAACCATGATTCGGTCCAGAACATGTCACTGGAGGCATCAAACCTGAGAAACAGTGGAATTGAGCCTTCTCATAACGAGGAAGCAAATGAATCAAGAAGGCAGGTTTTGAAAAAGAGAACAACATCAGAGAAGAATGTTAGCTTGAGCGTTCTACAACAATACTTTTCTGGGAGTCTGAAGGATGCCGCAAAAAGTATTGGTGTTTGCCCAACAACCCTGAAAAGGATATGCAGGAACAATGGGATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCGCTCATTAAAGAAAATACAGACTGTGCTTGATTCTGTTCATGGAGTGGAAGGAGGGTTAAATTTTGATCCATCTAAGGGGGAATTTGTGGCACTTCCTAAGAAAAGTACCATGAAAGACCCTGGGCCTGTTGCAGAAGTTGCAGGCCTAGTACCACCAGCGTCTTGTAGTGCAGGTGAGAAGTCAGCATTTAAGTTTGAGATCACCAATGTTCATGTTATGGGAAAGCAGCTTGTGCGCTCATCGTATGAATTGAAGAAAGCTAATGCTTCTTCGGTTGATTGTAGTGAAGATTCAAAATCAATGGCGACAGACTATGATTTTTCGTTGAGAGGAATGAGAGCAGAAAAATCTGAATGCAATATAGTTGGATTGGACACCGGTATGGATGGCGACGATGGCGTTGTTGAACTTAATCACCCTTCTTGTTCAAGCTTGACAAACTCATCTAATAACTCTAGTTCAATGATTCATAGCAGTTCATCAGCCTCTCAGAGCTTTGAGAACAAGGAGCATTCCAAACTCAAATCAACCATTGCTGATGGTGAGACAAAGATTGTTGTGAAAGCTACCTATAGAGAAGACACCGTTCGATTCAAGTTTAATCCATCTTCAGGTTGCTTCCAGCTATATGAAGAAATTGGAACAAGATTCAAATTACAAGATGGGTTATTCCAGCTCAAATATCTAGATGATGAAGATGAATGGGTGATGTTGGTGAACGACTCGGATTTGCAAGAGTGCATCGATATAATGGATGATACTGGCACGCGTTACGTCAAGTTTCTTGTTCGCGATATGCCTTGTGTTTTAAGTAGCTCTGGCAGTAGTGGTTGCTACTTTGGAGGCACCTCATAG 2796 0.4113 MQYPYSPKGRGNGYQSSPRSQLEGSTSLDSRMSNSISESIPNSFSELLNLDAYLCHSPSMTDQILGNWLPSFASVPYPSPDRFNLMEQNCGKFYTTEVNGNCSTTETLPSYGERAVFQQMDNLPGFSDDANNLNPKQKVNGSAQNHNTLDMGNYLIPRPPGLSLDERMLRALSFFKASAGEGILAQVWVPIKHGDQFILTTSEQPYLLDQMLSGYREVSRTFTFSVGKLGSIPGLPGRVFNSKVPEWTSNVGYYNKAEYLRVEHAINHEVRGSIAFPISDVHSELPCCAVLELVTTTEKPDFNSELELVCHALKLVNLRTTMPPRLISKCLSNNKRDALTEITDVLRSVCHAHRLPLALTWIPCSYTEGTEVEATRIQIKEGHSSSSEKSILCIEESACYITDRALEGFVQTCIQHHLEEGKGIAGKALQSNHPFFCPDVKDYDISEYPLVHHARKYNLNAAVAIKLRSTYTNDDDYILEFFLPVTVRGSLEQQLLLDSLSVTMQKMCRSLRTVSDAESPGTKNSQTGYENKNIFSFSPMSRRNSQIPLVSGNHDSVQNMSLEASNLRNSGIEPSHNEEANESRRQVLKKRTTSEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRNNGISRWPSRKINKVNRSLKKIQTVLDSVHGVEGGLNFDPSKGEFVALPKKSTMKDPGPVAEVAGLVPPASCSAGEKSAFKFEITNVHVMGKQLVRSSYELKKANASSVDCSEDSKSMATDYDFSLRGMRAEKSECNIVGLDTGMDGDDGVVELNHPSCSSLTNSSNNSSSMIHSSSSASQSFENKEHSKLKSTIADGETKIVVKATYREDTVRFKFNPSSGCFQLYEEIGTRFKLQDGLFQLKYLDDEDEWVMLVNDSDLQECIDIMDDTGTRYVKFLVRDMPCVLSSSGSSGCYFGGTS 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0354 931 MobiDBLite consensus disorder prediction 1 35 - -
Lal25g0354 931 SUPERFAMILY CAD & PB1 domains 827 915 - -
Lal25g0354 931 Pfam RWP-RK domain 597 645 IPR003035 -
Lal25g0354 931 Pfam PB1 domain 833 911 IPR000270 GO:0005515
Lal25g0354 931 ProSiteProfiles RWP-RK domain profile. 578 665 IPR003035 -
Lal25g0354 931 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 7 927 - -
Lal25g0354 931 CDD PB1_NLP 834 912 IPR034891 -
Lal25g0354 931 PANTHER PROTEIN NLP8 7 927 IPR045012 GO:0003700
Lal25g0354 931 ProSiteProfiles PB1 domain profile. 831 913 IPR000270 GO:0005515
Lal25g0354 931 MobiDBLite consensus disorder prediction 789 814 - -
Lal25g0354 931 MobiDBLite consensus disorder prediction 9 35 - -
Lal25g0354 931 Gene3D - 827 912 - -
Lal25g0354 931 SMART PB1_new 831 913 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0354 Lal-Chr25 2402774 2409895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0354 1 928 NLP Transcription Factor Family AT2G43500 47.912 0.0 781
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lal25g0354 PB1 5.4e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0354 - - gmx:100804426 1192.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0354 25 2402774 2409895 Lal9g0179 9 1112466 1118396 PCT
Lal9g0179 9 1112466 1118396 Lal25g0354 25 2402774 2409895 PCT