Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0350 ATGGAGGGTTCAGGTCGATCAGTGGAAGAAATATTCGAAGATTTCAGAGGCCGTAGAGGTTCTATCATCAAAGCCCTTACCACTGATGTTGCAGATTTCTACAATCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGATTACCTAACGGGCAGTGGGAAGTAAATTTACCTGTTGAAGAAGTTCCCCCAGAGCTTCCTGAGCCCGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAGGACTGGTTGTCTTTAGTTGCTGTTCATAGTGACAGTTGGTTGCTTGCCCTTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAAAGGTGACAGGAGGCGACTGTTCAATATGATGAATGACCTACCAACAATATTTGAAGTTGTTACTGGTACTGCAAAGAAACAAGTTAAAGAGAAGTCTTCGGTTTCAAACAACAGTGGCAGCAAATCCAAGTCCAGCTCTAAAGTGGTGAAGGAGTTAGTTTATGTGTCTGGGGGTGTTCACTCCAGAAATGGGAATATTAGAATAGATTTTGGAAACATCATGAAAATGCGAGCTCCTGAGGCTCAGGGTAGACAGTCAAAGGCATTGCAACCAAAAGATGAGGATGAAGAAGTGGAAGAGCTAGACGAAGATGAGCACGGCGAAACCTTGTGTGGTGCATGCGGTGATGCTACTGATGATTTCTGGATATGCTGTGACATCTGCCAGCGGTGGTTCCATGGAAAATGTGTGAAGATCACCCCTGCTAGAGCAGCGCATATCAAGGACTACAAGTGCCCATCATGCAGCAGTAACAAGAGAGCTCGTTAA 828 0.4469 MEGSGRSVEEIFEDFRGRRGSIIKALTTDVADFYNQCDPEKENLCLYGLPNGQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLLALAFYFGARFGFDKGDRRRLFNMMNDLPTIFEVVTGTAKKQVKEKSSVSNNSGSKSKSSSKVVKELVYVSGGVHSRNGNIRIDFGNIMKMRAPEAQGRQSKALQPKDEDEEVEELDEDEHGETLCGACGDATDDFWICCDICQRWFHGKCVKITPARAAHIKDYKCPSCSSNKRAR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0350 275 MobiDBLite consensus disorder prediction 194 217 - -
Lal25g0350 275 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Lal25g0350 275 Pfam PHD-finger 224 270 IPR019787 -
Lal25g0350 275 SUPERFAMILY FYVE/PHD zinc finger 205 269 IPR011011 -
Lal25g0350 275 SMART PHD_3 223 269 IPR001965 -
Lal25g0350 275 ProSitePatterns Zinc finger PHD-type signature. 224 268 IPR019786 -
Lal25g0350 275 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 187 275 - -
Lal25g0350 275 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 1 161 - -
Lal25g0350 275 PANTHER CPG BINDING PROTEIN 1 161 IPR045104 GO:0006355|GO:0042393
Lal25g0350 275 PANTHER CPG BINDING PROTEIN 187 275 IPR045104 GO:0006355|GO:0042393
Lal25g0350 275 CDD PHD_AL_plant 223 271 IPR044104 -
Lal25g0350 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 270 IPR013083 -
Lal25g0350 275 ProSiteProfiles Zinc finger PHD-type profile. 221 271 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0350 Lal-Chr25 2374991 2377996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0350 1 275 Alfin-like Transcription Factor Family AT3G42790 63.830 1.58e-111 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lal25g0350 Alfin 9.2e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0350 - - gmx:100170700 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0350 25 2374991 2377996 Lal10g1079 10 17747486 17751145 LSH
Lal25g0350 25 2374991 2377996 Lal8g0296 8 1986896 1990757 LSH
Lal25g0350 25 2374991 2377996 Lal20g1047 20 14332126 14339713 PCT
Lal25g0350 25 2374991 2377996 Lal18g0134 18 1085727 1090731 PCT
Lal20g1047 20 14332126 14339713 Lal25g0350 25 2374991 2377996 PCT
Lal18g0134 18 1085727 1090731 Lal25g0350 25 2374991 2377996 PCT