Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0341 ATGGGAAATCAGAAGCAAAAATGGACCGCCGATGAAGAAGACGCTCTCCACCGTGGCGTTCAGAAATACGGTGCCGGAAAATGGAAGAACATCCTCAAAGATCCCGATTTCGCCCCGTTCCTCACTTCCCGTTCCAACATCGACCTTAAGGATAAATGGCGTAATTTGAATGTTAGCAATGGTCAAGGTGGCCCTAAAGATAAATCCAGGACTTCTAAGCCCAAAGCAATTCTTGCTTCAGCTTCAACTCCTGCTGCTAGTTCAGCTTTAGTTCCTTTTACTGCTCCACTAAGTGTTGTTCCTGCTCCTCAGAGTAATATTGTTGATGATCCTTCTTCAAACGCTGAAGATTCCAAGAATCCTCCTCGGTACAATGCACTGGTTTTTGAAGCTCTATCAGCAATCAAAGATGCTAATGGTTCTGACGCAAATGCTATTTCTAGTTTCATCAAGCAAAATCATAAGGTTCCTACAAATTTCAGAAGGGCATTAAGTACAAGGTTGAAGAGGCTTGTTAGTCAAGGGAAAATTGAAAAGGTAAATTGGTCCTCTATGATTCTTTGCAGAAATATAAATTATAGCTATTCACCAGATTTTAACACATTGGCTTTAGAGGGTTTACTGGACTGGCTAGAAGACCCGTTCCTGGTTCACCTGATTGAACCAGCCTCCAGTCTGGTTCTATTAGGAGGGTTTCTTATCCTTGTTTTCTTGGCATTCCTTTACTGCAAAAGAAGCAAATTTTGTTTACCTGTGATGACCGTACTCTTGGCTCATAAGCAGAAATTTCACATATTTAAACTGAATGGTGTTGAAGCTTGTTTTCTTGATTCCTCTTTAAATCCCATGCAGGTACAAAATGGTTACAGGATGAAGGAAGCCCCAAGTGGAACGAAATCACCATCACCCTCACCAAAACCAAAGGATGCTTGGCCTCGACAATCACCAGCCTCCAGTTTTGTGTCATGCAGTGAGACAGTAAGGGAAGCCGCCGCCACTGCAGCCTACAGAATTGCTGAGGCAGAGAACAAAGCATTTTTGGCTGCCGAGGCATTTAAGGAGGTAGATAGACTGTCACAGATGGCTGAAGATAATGAGGTAGTGTTACGGCTGGTGACACAGATGTATGAACAAAGTTTGCGTGGTGAAGTTGTTCGTTTGGATTGA 1167 0.4302 MGNQKQKWTADEEDALHRGVQKYGAGKWKNILKDPDFAPFLTSRSNIDLKDKWRNLNVSNGQGGPKDKSRTSKPKAILASASTPAASSALVPFTAPLSVVPAPQSNIVDDPSSNAEDSKNPPRYNALVFEALSAIKDANGSDANAISSFIKQNHKVPTNFRRALSTRLKRLVSQGKIEKVNWSSMILCRNINYSYSPDFNTLALEGLLDWLEDPFLVHLIEPASSLVLLGGFLILVFLAFLYCKRSKFCLPVMTVLLAHKQKFHIFKLNGVEACFLDSSLNPMQVQNGYRMKEAPSGTKSPSPSPKPKDAWPRQSPASSFVSCSETVREAAATAAYRIAEAENKAFLAAEAFKEVDRLSQMAEDNEVVLRLVTQMYEQSLRGEVVRLD 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0341 388 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 181 - -
Lal25g0341 388 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 284 387 - -
Lal25g0341 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lal25g0341 388 CDD SANT_TRF 6 57 - -
Lal25g0341 388 Gene3D - 117 185 IPR036388 -
Lal25g0341 388 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 197 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal25g0341 388 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Lal25g0341 388 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lal25g0341 388 SMART sant 4 59 IPR001005 -
Lal25g0341 388 Gene3D - 8 86 - -
Lal25g0341 388 Pfam linker histone H1 and H5 family 122 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal25g0341 388 MobiDBLite consensus disorder prediction 291 317 - -
Lal25g0341 388 CDD H15 122 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal25g0341 388 PANTHER SINGLE MYB HISTONE 4 1 181 IPR044597 GO:0003691
Lal25g0341 388 PANTHER SINGLE MYB HISTONE 4 284 387 IPR044597 GO:0003691
Lal25g0341 388 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal25g0341 388 MobiDBLite consensus disorder prediction 56 76 - -
Lal25g0341 388 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Lal25g0341 388 SUPERFAMILY "Winged helix" DNA-binding domain 121 182 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0341 Lal-Chr25 2327733 2331885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0341 284 387 Single Myb Histone (SMH) Gene Family AT1G72740 35.577 3.23e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal25g0341 Linker_histone 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0341 K09422 - gmx:780537 234.187