Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0339 ATGGAACCTCATGTTGGTAACAAGTTCCGTCTTGGCCGCAAACTTGGTAGCGGATCATTCGGTGAAATCTATCTCGGTACTAATATTCAGACTAATGAAGATGTTGCGGTTAAGCTTGAAAAGGCTAAAACTAAGCATCCCCAATTGTTGTATGAATCAAAGCTGTATAAGATACTGCAAGGAGGAACTGGGATCCCAAATGTTAGATGGTTTGGTGTTGAAGGAGAATATAATGTCCTTGTGATGGATTTACTTGGCTCTAGTCTTGAGGATTTGTTTAATTTCTGTAGTCGGAAATTATCCCTCAAAACCGTTCTTATGCTCGCAGATCAGATGATTAACCGAGTTGAGTATGTTCATTCCAAATCATATTTACACAGGGACATCAAGCCAGACAACTTCCTCATGGGTTTGGGAAGGCGTGCAAATCAGGTGTATGCCATTGACTTTGGTCTTGCTAAGAAATACAGAGATAACTCTACCCATCAGCATATTCCATACAGAGAGAATAGGAATTTGACAGGAACAGCTAGGTATGCTAGCATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGACGACTTAGAGTCACTTGGATTCGTTCTTATGTATTTCTTGAGAGGAAGTCTTCCATGGCAGGGTTTGAAAGCGGGAAATAAGAAACAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGCCATGGCTATCCCTCAGAATTTGCTTCATACTTTCATTACTGTCGGTCACTGCGGTTTGATGACAAACCAGATTATGCTTATTTGAAAAGGCTCTTCCGTGACCTTTTCATTCGTGAAGGACTCCAATTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTTCTGCTCCTCCAGTACGAGCTATTGGTGCTATTGCTGGACCAAGTTCTGGCATGCCGCCACTTGTCAATGCTGATAGACAGACAGGTGGGCAAGATGGTAGGCATACTGGTTGGTCTTCATCAGTCCCTACTCGTCGAAGAAACTCTGGACCTATTGCAAATGATGGAATCTTATCCAGACAAAAAAACCCTGTTACAAGTGACACAGCTGGATCGAAAGAAGTTATGATGTCTGGTTCTAATATCTTCTTGTCAAGTGCATCTGCAAGGCGTGGTGCTGTCTCCAGCAGTCGTGATGCACTTGTTAGCAATGAGACTGAACCCTCTCGTTTTCATGCCACAGATGCAGGTCCAGCAGCAGTCCCTAAAATCTCTGGTGCTCAAAGAAGTTCGGCTATCACGACATCTGAGCACAACTGGACATCCTCTGGCAGAAAAACATCAAACATTAAGGATTATGAAAGGGCTCTTAGAGGTATTGAGACCCTGAATATGAAAGATCAGAGGATAAACTATTAG 1419 0.4207 MEPHVGNKFRLGRKLGSGSFGEIYLGTNIQTNEDVAVKLEKAKTKHPQLLYESKLYKILQGGTGIPNVRWFGVEGEYNVLVMDLLGSSLEDLFNFCSRKLSLKTVLMLADQMINRVEYVHSKSYLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDNSTHQHIPYRENRNLTGTARYASMNTHLGIEQSRRDDLESLGFVLMYFLRGSLPWQGLKAGNKKQKYEKISEKKVSTSIESLCHGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGLQFDYVFDWTILKYQQSQISAPPVRAIGAIAGPSSGMPPLVNADRQTGGQDGRHTGWSSSVPTRRRNSGPIANDGILSRQKNPVTSDTAGSKEVMMSGSNIFLSSASARRGAVSSSRDALVSNETEPSRFHATDAGPAAVPKISGAQRSSAITTSEHNWTSSGRKTSNIKDYERALRGIETLNMKDQRINY 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0339 472 CDD STKc_CK1_delta_epsilon 8 281 - -
Lal25g0339 472 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lal25g0339 472 MobiDBLite consensus disorder prediction 401 447 - -
Lal25g0339 472 Gene3D Transferase(Phosphotransferase) domain 1 1 307 - -
Lal25g0339 472 MobiDBLite consensus disorder prediction 329 372 - -
Lal25g0339 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lal25g0339 472 Pfam Protein kinase domain 10 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal25g0339 472 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 456 IPR030509 GO:0004672|GO:0005524
Lal25g0339 472 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal25g0339 472 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Lal25g0339 472 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal25g0339 472 PANTHER CASEIN KINASE-RELATED 1 456 - -
Lal25g0339 472 MobiDBLite consensus disorder prediction 427 447 - -
Lal25g0339 472 MobiDBLite consensus disorder prediction 325 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0339 Lal-Chr25 2318530 2323179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0339 7 219 EF-hand Containing Proteins AT2G17890 28.959 6.91e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lal25g0339 Pkinase 5.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0339 K02218 - gmx:100778165 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0339 25 2318530 2323179 Lal18g0138 18 1114694 1120201 PCT