Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0338 ATGTCACGAGGGAGGATCCGGGCGAAGCTCCGAAGGAGCCATCTTTACACGTTTGGTTGCATTCGCCCAACCACCACTGATGAGTTGCCTAATCCACTTCATGGCCCTGGCTTCTCAAGAACGGTTTATTGCAACCAGCCACAAATCCATGACAAGAAGTCTCTATTTTACTGCAATAATAATGTATCAACTACCAAATACAATGTTATCACATTTTTTCCAAAGGCACTCTTTGAACAATTTCGAAGGGTTGCTAATATATACTTCCTTCTGGCTGCGTGCCTATCAGCCTCTTCGATTTCGCCATTTAGCCCATTGAGTATGATTGCTCCTTTGGTGTTTGTTTTGGGGCTTAGTATGGCAAAGGAAGGGTTGGAAGATTCTCGCAGGTTCCTTCAGGATGTCAAAGTTAATCACCGGAAAGCTAGCATCCATAAAGGCGATGGCGTTTTTGGTCCCAGGTCATGGCAGAATATTATGGTTGGGGATATCGTAAAAGTGGAGAAGGACCAATTTTTTCCATCAGACTTACTTCTCTTGTCATCAAGTTATGAGGATGGGATATGCTATGTGGAGACTATGAATTTAGATGGTGAGACCAACTTGAAGGTGAAAAGATGTTTGGAGGCTACCTTTTCTCTAGATAATGATGAGGCTTTTAAGGGTTTCTCAGGAACATTACATTGTGAAGACCCAAATCCGAACCTTTATACTTTTGTTGGAAATTTCGAGTATGAGCATCAGGTTTATGCTCTTGACCCCAGTCAAATTCTCCTACGAGATTCAAAGCTAAGGAATACTGATCATGTCTATGGGGTGGTCATTTTCACTGGTCACGACAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAAAGGAGTACAATAGAGAAAAAGATGGATTATATCATATACACTCTTTTCACTGTGCTTATATTGATATCCTTTATCAGTTCAATAGGATTTGTTGTGAAGACCAAGTATCAAGTCACAAAATGGTGGTACTTACGACCTGACGACATTGAAGACCAATATAACCCAAGGAAAATTGGATTGGCTGCAATGAGCCATCTGATTACTGCACTCATTCTTTATGGATATTTGATACCAATCTCGCTTTATGTTTCAATTGAGATTGTAAAGGTATTACAAGCAACCTTCATTAACAAAGACATTCATATGTATGATGAAGTAACTGGGACTCGAGCTGATGCACGAACATCAAATTTGAATGAAGAGTTGGGTCAGGTGGACACTATCCTCTCTGATAAAACTGGCACTTTAACCTGCAATCAGATGGATTTCTTGAAGTGTTCCATTGCTGGAACTGCATATGGTGTGCGTGCTAGTGAAGTTGAAGTTGCTGCAGCAAAGCAGATGGCTTCTGATATTGAGGAACAAGACTCCGATCTCTCTAATTTCCCCATGTCTAAGAGTAACATGCCATCGGAAAAGGTTACATCAGGTGAAGAAATTGTACTGCAAACTTCTTTTACTTCTAAGGATGATAAGGATCAAAAGCCTGCCATAAAGGGATTTGGTTTTGAAGACAACCGTCTTAAGAATGGTAACTGGTTGAATGAACCCAACGCCGGTGATCTTTTGATGTATTTCCGGATATTAGCAGTTTGTCATACTGCCATTCCTGAGCAGAATGAGGAGACTGGTAGTATTACATACGAAGCTGAGTCACCTGATGAAGGGGCTTTTCTTATAGCAGCTAGAGAATTTGGTTTCGAGTTTTATAAAAGAACTCAATCAACTGTTGTAGTACGTGAAAGATTTGCTGCTTCAGGACAAGTGGTTGAAAGAGAGTATAGAATCTTGAATCTGCTGGATTTTACTAGCACAAGAAAGCGTATGTCTGTGATTGTGCGTGATGAGGAGGGAAGCATTATTCTTTTTTGCAAAGGAGCTGACAGTATCATATTTGACCGGTTGTCAAAGAATGGGAAACTGTATTTGGATTCTAGTACTAAACATTTGAATGAATATGGAGAAGCTGGTTTGAGAACACTAGCTCTGGGTTATAGAAAGCTTGATGAGCAAGAATACTCTGATTGGAATAATGAGTTTCAGAAAGCCAAGACAGCTGTTGGGCCTGACAGAGAGGCGATACTTGAGCGGTTATCAGATATTATTGAAAGAGAGTTGATTCTTGTTGGGGCTACTGCCGTCGAAGATAAACTGCAGAAAGGGGTGCCTCAATGCATTGATAAACTTGCTCAAGCTGGTCTAAAAATCTGGGTGTTGACCGGGGATAAGCTGGAAACTGCAATCAACATTGGATTTGCCTGTAGTTTGCTACGACAAGGCATGAAGCAAATCTGTATCAGTCTTCCAAATTCAAATTCGCTGGTCAATGATAGCAAAGAGGTTATTAAAAGTAACATCTTGAATCAAATAACCAATGCTTCACAAATGATAATACTGGAGAAGGATCCACATGCGGCATTTGCGTTAATCATTGAAGGGAAAACTCTAACATATGCTCTAGAAGATGATGTCAAGCATCAATTTTTGGGATTGGCTGTTGGTTGCGCATCTGTCATTTGTTGTCGTGTGTCTCCCAAGCAAAAGGCATTGGTAACAAGGTTAGTGAAACAAGGAACTGGGAAGACCACTCTAGCAATAGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAAGCAGATATTGGTGTCGGAATCAGCGGGGTTGAAGGTATGCAGGCGGTGATGGCTAGTGACTTTTCTATTGCGCAGTTTCGATTCCTAGAGCGGCTTCTGGTAGTCCATGGACACTGGTGTTACAAGAGAATTGCGCTAATGATATGTTATTTCTTCTACAAAAATATCGCATTTGGCCTCACCATATTCTATTTTGAAGCCTACACGGGCTTCTCTGGTCAATCGATTTATGAAGACTGGTACATGATATTGTTCAATGTTGTTCTTACATCATTGCCAGTCATTTCACTAGGAGTTTTTGAACAAGATGTTTCATCCGAAGTTTGCTTACAGTTTCCTGCACTATACCAGCAAGGGCCCAAAAATTTGTTCTTTGACTGGTATAGAATATTGGGATGGATGGGCAATGGTCTCTATACCTCCCTCGTTACCTTCTTCCTTGTCATCGTCATTTTCTACGACCAAGCGTTCCGTTTGGATGGCCAGTCCGCAGATATGAATGCCGTCGGTACCATAATGTTCACTTGCATCATCTGCGCCGTCAATTGCCAGATTGCACTGACAATGAGCCATTTTACATGGATTCAACACCTCTTTGTGTGGGGAAGCATAGCCACTTGGTACCTCTTTCTCTTGTTATATGGCACGCTTTCTCCGGTATACACCAAGAATGCCTACCAAATATTGGTTGAAGCTCTTGCTCCTGCTCCTATTTATTGGACAGCAACTCTTCTAGTAACAATTACATGCACTCTTCCTTATCTTGTTCACATATCCCTCCAAAGATTTTTCAACCCAATGGATCATCACATTATTCAAGAAATTAAGTACTACGAGAAGGACATCGAAGATCAACACATGTGGAAGAGGGAGCGCTCGAAAGCAAGACAGGAAACACAGATTGGATTCACAGCAAGAGTGGAAGCAAAGATGAGACAGTTAAGAGGGAAGTTGCAGAGGAAGCCAACTTCTGTGGGAATTTTGCCACCTTCATATACAAAAATAATTTAA 3684 0.4112 MSRGRIRAKLRRSHLYTFGCIRPTTTDELPNPLHGPGFSRTVYCNQPQIHDKKSLFYCNNNVSTTKYNVITFFPKALFEQFRRVANIYFLLAACLSASSISPFSPLSMIAPLVFVLGLSMAKEGLEDSRRFLQDVKVNHRKASIHKGDGVFGPRSWQNIMVGDIVKVEKDQFFPSDLLLLSSSYEDGICYVETMNLDGETNLKVKRCLEATFSLDNDEAFKGFSGTLHCEDPNPNLYTFVGNFEYEHQVYALDPSQILLRDSKLRNTDHVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISFISSIGFVVKTKYQVTKWWYLRPDDIEDQYNPRKIGLAAMSHLITALILYGYLIPISLYVSIEIVKVLQATFINKDIHMYDEVTGTRADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRASEVEVAAAKQMASDIEEQDSDLSNFPMSKSNMPSEKVTSGEEIVLQTSFTSKDDKDQKPAIKGFGFEDNRLKNGNWLNEPNAGDLLMYFRILAVCHTAIPEQNEETGSITYEAESPDEGAFLIAAREFGFEFYKRTQSTVVVRERFAASGQVVEREYRILNLLDFTSTRKRMSVIVRDEEGSIILFCKGADSIIFDRLSKNGKLYLDSSTKHLNEYGEAGLRTLALGYRKLDEQEYSDWNNEFQKAKTAVGPDREAILERLSDIIERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKLETAINIGFACSLLRQGMKQICISLPNSNSLVNDSKEVIKSNILNQITNASQMIILEKDPHAAFALIIEGKTLTYALEDDVKHQFLGLAVGCASVICCRVSPKQKALVTRLVKQGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIALMICYFFYKNIAFGLTIFYFEAYTGFSGQSIYEDWYMILFNVVLTSLPVISLGVFEQDVSSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYTSLVTFFLVIVIFYDQAFRLDGQSADMNAVGTIMFTCIICAVNCQIALTMSHFTWIQHLFVWGSIATWYLFLLLYGTLSPVYTKNAYQILVEALAPAPIYWTATLLVTITCTLPYLVHISLQRFFNPMDHHIIQEIKYYEKDIEDQHMWKRERSKARQETQIGFTARVEAKMRQLRGKLQRKPTSVGILPPSYTKII 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0338 1227 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 521 685 IPR023299 GO:0000166
Lal25g0338 1227 CDD P-type_ATPase_APLT_Dnf-like 59 1039 - -
Lal25g0338 1227 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1219 - -
Lal25g0338 1227 SUPERFAMILY HAD-like 417 934 IPR036412 -
Lal25g0338 1227 Pfam Phospholipid-translocating P-type ATPase C-terminal 907 1157 IPR032630 -
Lal25g0338 1227 Gene3D - 419 431 IPR023214 -
Lal25g0338 1227 Pfam Cation transport ATPase (P-type) 544 649 - -
Lal25g0338 1227 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Lal25g0338 1227 PRINTS P-type cation-transporting ATPase superfamily signature 879 898 - -
Lal25g0338 1227 Gene3D - 578 696 IPR023299 GO:0000166
Lal25g0338 1227 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1219 - -
Lal25g0338 1227 SUPERFAMILY Calcium ATPase, transduction domain A 148 286 IPR008250 -
Lal25g0338 1227 MobiDBLite consensus disorder prediction 468 489 - -
Lal25g0338 1227 SFLD p-type atpase 406 930 IPR044492 -
Lal25g0338 1227 Gene3D - 718 919 IPR023214 -
Lal25g0338 1227 SFLD Haloacid Dehalogenase 406 930 - -
Lal25g0338 1227 Coils Coil 448 468 - -
Lal25g0338 1227 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Lal25g0338 1227 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Lal25g0338 1227 Gene3D - 116 288 - -
Lal25g0338 1227 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 1151 IPR023298 -
Lal25g0338 1227 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 845 960 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal25g0338 1227 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 57 1165 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Lal25g0338 1227 Gene3D - 432 470 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0338 Lal-Chr25 2310847 2317773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0338 1 1216 Primary Pumps ATPases AT1G17500 73.541 0.0 1883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0338 K01530 - gmx:100778710 2087.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0338 25 2310847 2317773 Lal25g0338 25 2310847 2317773 ECH
Lal25g0338 25 2310847 2317773 Lal10g1088 10 17779438 17785666 LSH
Lal25g0338 25 2310847 2317773 Lal8g0291 8 1963333 1970186 LSH
Lal25g0338 25 2310847 2317773 Lal1g1370 1 15578351 15585726 PCT
Lal1g1370 1 15578351 15585726 Lal25g0338 25 2310847 2317773 PCT