Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0335 ATGGGTCATCACTCTTGCTGCAACAAACAGAAGGTCAAAAGAGGGCTATGGTCACCTGAAGAAGATGAGAAGCTCATAAACTACATCACAACTTATGGACATGGTTGTTGGAGTTCTGTTCCAAAACTTGCAGGCCTGCATAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGTTTCTCTTCTCAAGAAGCAGCACTCATTATAGAACTCCATAGTATTCTAGGCAATAGGTGGGCTCAGATTGCAAAGCACCTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAAAAGCTCCTTTCTCATGATGTTTTTCCTTCTTTATCCACATTTTTTTGCAATGGTTCTATTGAAAGTTTCTTCCCTTTAAGTACTGAAAACCCTAGTCTTATTAACCCTCATCATCATAATCACCAAGACCATTTGTATCTTCCAATCTCATCCCCAATCCTACATGGTAATTTTGATCATAATGATATCAAAATAGACATTAACAATTATAATTCCTATTTCCTTCATATTCAGAATCCAATGCTACAAACAGTAGTATCATCCAATAATCCATCTTTCTTTGAAGATTCATGGTCATTGGGAAGTGTACTTTCTCATCTTAATCCAAGTCAAGAAATTCAAATCACCAAAAGTGATGCCACCACCCATCATCATTATAATATTGTTGAGAAATTCATTAATCCAAGTACATTGCAGCATTATGACTTGGTGGAACCCAACATTACTGTGCCAAAAGTTTGTGATAGTATTGAAGATTATGTTTATAATATTCCATATAATTCATCTGTTTCACAAGAACAACATGAGGCTCTTGAGAGAGTTCAGTGTTATACACCTAGTATTTGTCCACAAGATGATCAAACTCTAGTTGCAAAGAATCAAATGGAGTACATTGATGCTTTGATCATTTCATCATTCCAATCAACAGCAACATCTTCATCAATAGTTACAAAACCAATCATTCCTTCAACCTTGGATTACTCTTGA 1050 0.3552 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLHRCGKSCRLRWINYLRPDLKRGSFSSQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDVFPSLSTFFCNGSIESFFPLSTENPSLINPHHHNHQDHLYLPISSPILHGNFDHNDIKIDINNYNSYFLHIQNPMLQTVVSSNNPSFFEDSWSLGSVLSHLNPSQEIQITKSDATTHHHYNIVEKFINPSTLQHYDLVEPNITVPKVCDSIEDYVYNIPYNSSVSQEQHEALERVQCYTPSICPQDDQTLVAKNQMEYIDALIISSFQSTATSSSIVTKPIIPSTLDYS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0335 349 Gene3D - 11 67 - -
Lal25g0335 349 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal25g0335 349 SMART sant 13 63 IPR001005 -
Lal25g0335 349 SMART sant 66 114 IPR001005 -
Lal25g0335 349 CDD SANT 17 61 IPR001005 -
Lal25g0335 349 PANTHER MYB DOMAIN PROTEIN 55 2 337 - -
Lal25g0335 349 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal25g0335 349 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal25g0335 349 PANTHER TRANSCRIPTION FACTOR MYB26 2 337 - -
Lal25g0335 349 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Lal25g0335 349 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal25g0335 349 CDD SANT 69 109 IPR001005 -
Lal25g0335 349 Gene3D - 69 116 - -
Lal25g0335 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lal25g0335 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0335 Lal-Chr25 2291185 2293160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0335 1 118 MYB Transcription Factor Family AT3G13890 94.915 9.80e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal25g0335 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0335 K09422 - gmx:102662609 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0335 25 2291185 2293160 Lal10g1090 10 17798060 17800103 LSH
Lal25g0335 25 2291185 2293160 Lal8g0289 8 1951066 1953094 LSH