Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0320 ATGAGTCGAGAACAACAGAAACGAGGGAAGCAAGAAAAAGGCTCCAATGGTGCTGAGAAGGTCATTGTTGCAGTCAAGGCATCAAAGGATGTTCCAAAAACTGCTCTTGTTTGGTCTTTGACTCATTTTGTTCAACCTGGTGATTGCATTACACTGCTAGTGGTTGTGCCGTCACAGAGTTCAGGCCGAAGATTATGGGGTTTTCCTAGGTTTGCTGGTGATTGTGCTAGTGGTCACAAGAAATCTCACACTACAGGAACAAGTTCAGAACAGAAGACTGATATCACTGATTCTTTCTCTCAGATGATCCTTCAGCTCCACGATGTCTATGATCCTAACAAGATAAATGTCAAGATTAAAATTGTTTCCGAGTCTCCGTGTGGAGCAGTGGCTGCAGAAGCCAAGAAAATCCAAGCCAATTGGGTTGTTTTAGACAAACATCTCAAACACGAGGAAAAGTGGTGCATGGAAGAGCTGCAGTGCAACATCGTTGTTATGAAGCGTTCCCAACCGATAGTGCTCCGCTTGAATTTGGTTGGACCCCTAAAGAAGGATATTGAAGATACAGGTCCATTACCTTCTGAGCAAGATGAGATGCCTTCAAAACAAACCAAGAAGAAGAAAAATACTATAAATTCGATAAAAGGGCCAATTGTCACTCCAACTAGCAGCCCCGAGCCGGGGACATCGTTTACTGCAACTGAAGTTGGCACTTCATCAGTTTCAAGCTCCGATCTAGGAACTTCACCATTCTTCATCTCTGAGATGAATGGTGAGTCAAAGAAAGAGGAAACTATCGAAGAAAATCAAGAACTTGATGATACTAATTCAGATACAGACAATGAGACTTTGTCCACATCTTCAGCCAGATTGAGATTCCGGCCATGGATAGCTGATTTATTTTTACATCAACAATCTTCCCAACGCATAGCAGAAATAACAGAGAGATCTCATAATAAGCCTCAATCATCGACGGCTAGAGCTTTGCTTGAAAAGTTTTCACGGCTCAATAGAGAAGCTGAACTTGACATCTCAACCTATACAACTAATGACTTGGATTTTAGCAGAAATGTAAGAGAAGCAGTAGCATTATCTAGAAATGCCCCACCCGGTCCACCTCCATTATGTTCAATATGTCAACACAAGGCTCCTGTTTTCGGAAAACCTCCAAGGTTGTTCAGCTACACTGAGTTGGAGCTTGCTACTGGTGGATTTTCACAAGCTAATTTCTTGGCAGAAGGAGGGTTTGGATCTGTTCACAGAGGTGTTCTTCCAGATGGACAAGTCATTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAGGGTGATGTTGAATTTTGCTCGGAGGTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTTTTGCTGATTGGATTCTGTATAGAGGATAAGCGAAGGCTTCTAGTTTATGAGTACATCTGCAACGGATCTTTGGATACTCATTTGTATGGGAGGCAACTAGAACCATTAGAATGGTCTGCACGGCAAAAAATTGCTGTTGGAGCTGCTCGAGGGTTGCGGTATCTACATGAAGAGTGCAGAGTGGGTTGCATTATTCACCGTGATATGCGGCCAAACAACATTCTTATCACTCATGATTTCGAGCCACTGGTAGGAAAAATGTTCATTTCACTAAATAATCATGTCGAATTCTGCAAGGTTGGTGATTTTGGACTTGCGAGGTGGCAACCTGATGGAGACACAGGTGTGGATACCAGAGTAATTGGAACGTTCGGGTATTTGGCTCCTGAATATGCTCAAAGTGGCCAAATAACTGAAAAGGCTGATGTTTATTCATTTGGAGTGGTATTGTTGGAGCTTGTAACAGGGCGAAAAGCCGTCGATCTCAACCGGCCCAAGGGACAACAGTGTCTTACTGAGTGGGCACGACCACTGTTAGAAGAATATGCTATTGAGGAACTTATTGACCCAAGTTTGGGAAGTCACTATTCAGAACATGAGGTCTATTGCATGCTACATGCTGCATCATTGTGCATAAGGAGAGATCCTTGTTCTAGACCACGCATGTCACAGGTTCTCCGAATACTGGAGGGTGACGTCATGATCGACCCAAATTACATTCCAACTCCTGGTTATGATGCCCGAAACCGGAGTGGTTGA 2145 0.435 MSREQQKRGKQEKGSNGAEKVIVAVKASKDVPKTALVWSLTHFVQPGDCITLLVVVPSQSSGRRLWGFPRFAGDCASGHKKSHTTGTSSEQKTDITDSFSQMILQLHDVYDPNKINVKIKIVSESPCGAVAAEAKKIQANWVVLDKHLKHEEKWCMEELQCNIVVMKRSQPIVLRLNLVGPLKKDIEDTGPLPSEQDEMPSKQTKKKKNTINSIKGPIVTPTSSPEPGTSFTATEVGTSSVSSSDLGTSPFFISEMNGESKKEETIEENQELDDTNSDTDNETLSTSSARLRFRPWIADLFLHQQSSQRIAEITERSHNKPQSSTARALLEKFSRLNREAELDISTYTTNDLDFSRNVREAVALSRNAPPGPPPLCSICQHKAPVFGKPPRLFSYTELELATGGFSQANFLAEGGFGSVHRGVLPDGQVIAVKQHKLASSQGDVEFCSEVEVLSCAQHRNVVLLIGFCIEDKRRLLVYEYICNGSLDTHLYGRQLEPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGKMFISLNNHVEFCKVGDFGLARWQPDGDTGVDTRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLLELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIEELIDPSLGSHYSEHEVYCMLHAASLCIRRDPCSRPRMSQVLRILEGDVMIDPNYIPTPGYDARNRSG 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0320 714 Coils Coil 262 282 - -
Lal25g0320 714 Gene3D Phosphorylase Kinase; domain 1 377 480 - -
Lal25g0320 714 ProSitePatterns Tyrosine protein kinases specific active-site signature. 526 538 IPR008266 GO:0004672|GO:0006468
Lal25g0320 714 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 16 712 - -
Lal25g0320 714 MobiDBLite consensus disorder prediction 206 255 - -
Lal25g0320 714 ProSiteProfiles Protein kinase domain profile. 405 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal25g0320 714 PANTHER OS01G0253100 PROTEIN 16 712 IPR045271 GO:0004714|GO:0006468
Lal25g0320 714 Gene3D Transferase(Phosphotransferase) domain 1 481 699 - -
Lal25g0320 714 Pfam Protein tyrosine and serine/threonine kinase 409 690 IPR001245 GO:0004672|GO:0006468
Lal25g0320 714 MobiDBLite consensus disorder prediction 184 286 - -
Lal25g0320 714 CDD STKc_IRAK 411 693 - -
Lal25g0320 714 SUPERFAMILY Protein kinase-like (PK-like) 389 699 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0320 Lal-Chr25 2192661 2197967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0320 364 687 Trihelix Transcription Factor Family AT1G68690 50.152 1.00e-98 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Lal25g0320 PK_Tyr_Ser-Thr 7.4e-40 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0320 25 2192661 2197967 Lal25g0320 25 2192661 2197967 ECH
Lal25g0320 25 2192661 2197967 Lal8g0277 8 1861255 1867022 LSH
Lal25g0320 25 2192661 2197967 Lal20g1101 20 15172362 15178220 PCT
Lal25g0320 25 2192661 2197967 Lal1g1356 1 15390935 15396773 PCT
Lal20g1101 20 15172362 15178220 Lal25g0320 25 2192661 2197967 PCT
Lal1g1356 1 15390935 15396773 Lal25g0320 25 2192661 2197967 PCT