Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0311 ATGGATGGTCTGAGATGGGATGCTTCACAACTTGTTTCTGACATACCAATCTTGAGGAGCACTCATGAGCAGCATCAAGACCTTGAAGGAGGAGGCTACTCCATAACCAACCTAAGTTCAAGTGTTTTTAATCAAATGCAAGAGATGCAGAAGTCTCAAACAACATGTGGTGCTTCTTCTTCTGAGATGATAATGAGTATGATGATGCCAAACACAAATCTACCATCACTGAGAACAGCAACAACCATGCCTGTTAAAGCAGCAGCTGTAACCAGTTTGGAATTAGAAGCTTACACATCTCAATCATGCCACCAGTCCCTTTCAGCCAGTATGATGAACAATTATGTGCCAGATTTCAGCATGGCCCACCAGCAACAACAACTTCTTATCAATAATGGCACACTACAAATCACCAAAGTTAACAACAACACTCTTGATCATTGCATGCTTTCCACTGTTGATGGTATCGTCAGCACAGAAAATAAGTCTGGTGAAGACATTGATGATGGGATTTCCATGATTTTATCTGACTGCAGAAACTTATGGAACAACAGCAACAACTTCAGTAATGGAAACAGTGCTGCTGTAGTTTCCTCTGGTGAATCTGAGAGTGATGCTTCCAATTCTAGAGATAAAAACATGCAACAGTACCATCATGTCAATGAATTGGAAGAAACAGTAGTTTCTCAAAGCTCCTCAGATCAATATGTTAGTCGACCAAAATTCATAGATTCTTGTGAGGTTAATAATTGCACAAAATGGAGTAATAATGATACTCACTATGATCCCTACTTCAGTATTGTTCAGAATTATCCTGCTTATAACACTGAAGTTGGTACTTTGAAGCTTATCTCAGAGAATCAACCAAAATCCAAGAAACCAAGGTGGGATATTAATAAGCATCCTTGTTCATCTACTATATGTTTCCAGCAGCCAAACTCATCATCAATGTCATCATTCAGTGAAGATTCAGAGACCATAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCATTTAGGCCAGTGAACTTAGGCTTGGAGGTTGTGGAAAAGCCTCAGAGGAAGAATGTGAAGATATCATCTGATCCACAAACTGTGGCTGCAAGGCAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAATATGGATACTGCATCAATGCTTGATGAGGCTGCTAACTATCTCAAGTTTCTTAGGTCACAAGTGAAAGCACTAGAAAGTGTAGGGAACAAGGTTAATGCAATGAATAATTCTCATCCTACTACTATTTCATTCTCTTTCAACCCTTCTTTTCCCATGCAAACTCATTTCCCCATCCAAAACCCTAGCCACAGTATCCAACCTTTTCTGGGATGA 1389 0.3996 MDGLRWDASQLVSDIPILRSTHEQHQDLEGGGYSITNLSSSVFNQMQEMQKSQTTCGASSSEMIMSMMMPNTNLPSLRTATTMPVKAAAVTSLELEAYTSQSCHQSLSASMMNNYVPDFSMAHQQQQLLINNGTLQITKVNNNTLDHCMLSTVDGIVSTENKSGEDIDDGISMILSDCRNLWNNSNNFSNGNSAAVVSSGESESDASNSRDKNMQQYHHVNELEETVVSQSSSDQYVSRPKFIDSCEVNNCTKWSNNDTHYDPYFSIVQNYPAYNTEVGTLKLISENQPKSKKPRWDINKHPCSSTICFQQPNSSSMSSFSEDSETIAQMKEMIYRAAAFRPVNLGLEVVEKPQRKNVKISSDPQTVAARQRRERISERIRVLQKIVPGGSNMDTASMLDEAANYLKFLRSQVKALESVGNKVNAMNNSHPTTISFSFNPSFPMQTHFPIQNPSHSIQPFLG 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0311 462 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 360 409 IPR011598 GO:0046983
Lal25g0311 462 Coils Coil 399 419 - -
Lal25g0311 462 Pfam Helix-loop-helix DNA-binding domain 370 409 IPR011598 GO:0046983
Lal25g0311 462 Gene3D - 365 431 IPR036638 GO:0046983
Lal25g0311 462 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 56 457 IPR045843 GO:0003700|GO:0006355
Lal25g0311 462 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 366 424 IPR036638 GO:0046983
Lal25g0311 462 MobiDBLite consensus disorder prediction 193 212 - -
Lal25g0311 462 PANTHER TRANSCRIPTION FACTOR BHLH87 56 457 - -
Lal25g0311 462 SMART finulus 366 415 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0311 Lal-Chr25 2140449 2141837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0311 104 459 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 43.646 5.28e-74 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0311 - - lang:109358246 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0311 25 2140449 2141837 Lal25g0311 25 2140449 2141837 ECH
Lal25g0311 25 2140449 2141837 Lal10g1111 10 17935014 17936988 LSH
Lal25g0311 25 2140449 2141837 Lal8g0270 8 1816945 1818210 LSH
Lal25g0311 25 2140449 2141837 Lal20g1122 20 15509394 15510524 PCT
Lal20g1122 20 15509394 15510524 Lal25g0311 25 2140449 2141837 PCT