Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0309 ATGTCGTTCCAAATTTGCACCGATGGTCACCTCTCCTCTATATTCGACAGCAACATCCTCACCGCCGCCGCCTTCATCGGCCATGATGGCTCAGCCTGGGCTCACAGCTCCAAATTCCCTAAGTTTAAGGTTGAAGAAATTGAAGCCATAATGAAAGGTTTTGATGAACCTAACATCATTGGCACAACTGAGTTGTACCTTGGTGGCACAAAGTACAATGTCATCCAAGGACAAAGTAGTGGAGCTTTTATAAATGCCAAGAATGAGGATGGGAGTGGGATAAGTGTGAAGAAAACAAAGGAAACTCTTGTGATTGGTACCTATGACTCACCTACGACCCCAGAAGAGTGTCACATCATTCTTCAGAAATTGGGAGATTATTTGATTGACCAAGGCTTCTAG 402 0.4428 MSFQICTDGHLSSIFDSNILTAAAFIGHDGSAWAHSSKFPKFKVEEIEAIMKGFDEPNIIGTTELYLGGTKYNVIQGQSSGAFINAKNEDGSGISVKKTKETLVIGTYDSPTTPEECHIILQKLGDYLIDQGF 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0309 133 CDD PROF 20 133 IPR005455 GO:0003779
Lal25g0309 133 PANTHER PROFILIN 1 133 - -
Lal25g0309 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Lal25g0309 133 PANTHER PROFILIN 1 133 IPR005455 GO:0003779
Lal25g0309 133 SUPERFAMILY Profilin (actin-binding protein) 8 133 IPR036140 -
Lal25g0309 133 Pfam Profilin 13 133 IPR005455 GO:0003779
Lal25g0309 133 PRINTS Plant profilin signature 1 11 IPR005455 GO:0003779
Lal25g0309 133 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Lal25g0309 133 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Lal25g0309 133 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Lal25g0309 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Lal25g0309 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
Lal25g0309 133 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Lal25g0309 133 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Lal25g0309 133 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Lal25g0309 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Lal25g0309 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Lal25g0309 133 SMART prof_2 12 133 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0309 Lal-Chr25 2120547 2121881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0309 1 130 Cytoskeleton Gene Families AT2G19760 49.231 4.16e-40 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0309 K05759 - csin:114268617 150.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1091 16 7352345 7360514 Lal25g0309 25 2120547 2121881 ECH
Lal23g0579 23 8605568 8607683 Lal25g0309 25 2120547 2121881 ECH
Lal25g0309 25 2120547 2121881 Lal25g0309 25 2120547 2121881 ECH