Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0308 ATGATGGATGAGAGGTCAAGAAATGAGGTTTTTTCTCCTAAGCTTTTGGATTTGATCTCAAATGAGAAAGAGTGGAACATGAACAAGAGTGAAGGAAAGTGTTCAGAGGAAAGGAAACTTGAGCTGAGGCTTGGTCCACCTAGTGGTGAAGATTGGTGTGAAGATAAAATGAAAAACATCAACAACACTAGTACTGAAAGGGATGAATCTCTACTCTCTCTTCTTAGTTACTTCTCAAACAATGGTTTTCAAAAACAGAATCTTTCAACTTCTGACACTCCAGCTAAGTCTATTTTACCCTCTTCATGGTCTTCTTCAACAAGTTACCAACATCAACATCAGGGTAGTAATAAAGCTTCATCATTTCTTGTGATGGGAAATGATGCATCTCAAGCTAAGTTGGTAGAGTTACAAAATGGTGCTGTTGATAAGAAAGTGTTCTCTACTCCCTCTTCTGCAAATACAGCTGTTCTCAACAACACCTCTCAGAAAAGAAATGCTCCTGGTCCATTGGTAGGTTGGCCTCCAATTCGTTCTTTCAGGAAGAACATTGGAAGCAGCAGCACTTCTAAGCCACAACCTGAGTCCTCTCAGCAGCAGCATGACAAGGTTGTTGGTAAGAAACATGTTGACAAGTATGGTAATAATGATGGTAAAGGTTTATTTGTCAAGATCAACATGGATGGTGTTCCTATTGGGAGAAAAGTGGACCTCAATGCTTACTATAGTTATGAAAATCTATCCTCTTCTGTGGATCAGCTTTTTAGAGGCCTCCTTGCAGCTCAAAGAGATTCCTCTGGTAGTGGAGTTAAGAAGAAAGAAGAAGAGAAACCTATTATAGGTTTATTGGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAAGATGCTTGTTGGGGATGTGCCATGGCATATGTTCCAATCAACAGTGAAGAGGCTGCGGGTGTTGAAGAGTACTGAGCTTTCTGCTTTTACCTTTGGTGGCAAGAAAGAAAAGATTCCATTCGACCAAAACTAA 1032 0.4002 MMDERSRNEVFSPKLLDLISNEKEWNMNKSEGKCSEERKLELRLGPPSGEDWCEDKMKNINNTSTERDESLLSLLSYFSNNGFQKQNLSTSDTPAKSILPSSWSSSTSYQHQHQGSNKASSFLVMGNDASQAKLVELQNGAVDKKVFSTPSSANTAVLNNTSQKRNAPGPLVGWPPIRSFRKNIGSSSTSKPQPESSQQQHDKVVGKKHVDKYGNNDGKGLFVKINMDGVPIGRKVDLNAYYSYENLSSSVDQLFRGLLAAQRDSSGSGVKKKEEEKPIIGLLDGSGEYTLVYEDNEGDKMLVGDVPWHMFQSTVKRLRVLKSTELSAFTFGGKKEKIPFDQN 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0308 343 Gene3D - 195 334 - -
Lal25g0308 343 Pfam AUX/IAA family 40 327 IPR033389 -
Lal25g0308 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 336 IPR003311 GO:0005634|GO:0006355
Lal25g0308 343 MobiDBLite consensus disorder prediction 86 114 - -
Lal25g0308 343 MobiDBLite consensus disorder prediction 181 200 - -
Lal25g0308 343 ProSiteProfiles PB1 domain profile. 220 323 IPR000270 GO:0005515
Lal25g0308 343 MobiDBLite consensus disorder prediction 157 210 - -
Lal25g0308 343 SUPERFAMILY CAD & PB1 domains 214 320 - -
Lal25g0308 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 10 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0308 Lal-Chr25 2113729 2118841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0308 224 334 B3 DNA Binding Superfamily AT4G23980 34.234 3.35e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal25g0308 AUX_IAA 1.3e-66 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0308 K14484 - gmx:100804593 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1114 10 17960559 17964591 Lal25g0308 25 2113729 2118841 ECH
Lal25g0308 25 2113729 2118841 Lal25g0308 25 2113729 2118841 ECH
Lal25g0308 25 2113729 2118841 Lal10g1114 10 17960559 17964591 LSH
Lal25g0308 25 2113729 2118841 Lal8g0266 8 1793415 1797689 LSH