Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0304 ATGGCAATGTCCTGCAAGGATGGTAAGCAACAACAAAGAGATTTGGACAATGGTAAATATGTCCGATACACACCTGAGCAGGTTGAAGCACTTGAGAGGCTTTATCATGATTGCCCTAAGCCTAGTTCCATTCGTCGCCAACAGCTCATTCGCGAGTGCCCGATCCTTTCCCACATTGAACCGAAGCAAATCAAAGTTTGGTTCCAGAATAGAAGATGCAGAGAGAAGCAGAGGAAAGAGGCTTCGCGGCTGCAATCTGTGAATAGGAAGCTGAGTGCAATGAACAAGCTTTTAATGGAGGAGAATGATCGGTTGCAGAAGCAGGTGTCTCAATTGGTGTATGAAAATGGCTTCTTTCGTCAACATGCCCCAAATACTAAGCTTACAACCAAAGACACAAGCTGTGAGTCTGCGGTGACTAGTGGTCAACGCAATTTGACAGTACAACATCCTCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCCTGCGGCCTAGTGGGTCTAGAACCCACAAGGGTTGCAGAAATCCTCAAAGATCGGCCTTCATGGTTTCGTGATTGCCGAGCTGTTGATGTGCTGAATGTGCTACCCACCGCAAATGGTGGAACCATAGAGCTGCTTTACATGCAGCTATACGCTCCAACCACATTGGCACCTGCCCGTGACTTCTGGTTGTTGCGCTACACATCTGTTCTTGAAGATGGAAGCCTAGTGATCTGTGAGAGGTCACTTAAAAATACACAAAATGGTCCAGCCATGCCCCCCGTGCAGCATTTTGTTAGAGCAGAGCTGCTGCCTAGTGGGTACCTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTGGAGCCATGGAGTGTTCCTGAAGTACTGCGTCCACTGTATGAATCATCGACAATGCTGGCTCAGAAGACAACAATGGCGGCCCTACGCCAACTAAGGCAGATTTCACATGAAGTTTCTCAGTCCAATGTCACTGGGTGTGGAAGACGACCAGCAGCTCTTCGAGCTCTTAGCCAGAGACTGAGCCGGGGTTTCAATGAGGCACTTAATGGATTTACTGATGAGGGGTGGTCTATGATTGCCAGTGATGGTGTTGATGATGTTGCGGTTCTAGTCAATTCATCACCTGACAAGTTAATGGGCCTTAATCTTTCCTTTGCCAGTGGATTCCCAGTTGTCAGTAATGCAGTCTTATGTGCCAAAGCTTCAATGCTATTACAGAATGTGCCTCCAGTGGTTCTACTAAGGTTCCTGCGGGAGCATAGATCAGAGTGGGCAGACAACAACATGGATGCTTACTCAGCTGCTGCCTTTAAAGTTGGTCCTTGTAGCTTATCAGGATCTCGAGTTGGAAACTATGGCGGCCAAGTTATTCTCCCTCTAGCACACACTATCGAGCATGAGGAGTTTCTGGAAGTTATTAAACTGGAAGGAGTTGCACATTCTCCTGAAGACGCAATTATGCCAAGAGAAATGTTTCTTTTGCAGCTCTGCACTGGAATGGATGAGAATGCTGTTGGCACCTCTGCTGAACTTATATTTGCTCCAATTGACGTGTCCTTTGCTGATGATGCCCCCCTTTTGCCTTCTGGATTTCGTATCATTCCTCTTGATTCTGGAAAGGAAGCATCCAACCCAAATCGCACCCTTGACCTTGCATCTGCCCTTGATATTGGCCCCACTGGCAACAAAGCATCAAATGATTACTCTGGAAACTCAGGCTGCATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGTCATATGCAAGAGCATGTAGCTTCCATGGCACGGCAATATGTTCGCAGCATTATATCGTCAGTTCAAAGGGTAGCATTAGCACTTTCTCCTTCTCATTTGAGTTCACAAGCTGGGCTTAGGACACCATTGGGTACTCCTGAAGCACAAACACTTGCTCGTTGGATCTGCAACAGTTATAGATGCTACTTGGGTGTCGAGCTACTTAAATCTAATAATGAGGGCAATGAATCTTTAATCAAATCCTTGTGGCATCACTCTGATGCTATACTGTGCTGCACGTTGAAGGCCTCGCCGGTGTTCACCTTTGCAAACCAAGCGGGGCTTGACATGCTGGAGACTACCTTAGTTGCTTTACAAGATATAACTCTGGAGAAAATATTTGATGATCACAGCCGAAAGATTCTCTGCTCAGAGTTTCCCCAGATTATTCAACAGGGCTTTGCATGCCTTCAAGGAGGCATTTGTCTTTCAAGCATGGGACGACCGATCTCATATGAAAGAGTAGTGGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCACATTGTATTTGCTTTATGTTCATGAACTGGTCTTTTGTTTGA 2523 0.4625 MAMSCKDGKQQQRDLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEASRLQSVNRKLSAMNKLLMEENDRLQKQVSQLVYENGFFRQHAPNTKLTTKDTSCESAVTSGQRNLTVQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPAMPPVQHFVRAELLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTMLAQKTTMAALRQLRQISHEVSQSNVTGCGRRPAALRALSQRLSRGFNEALNGFTDEGWSMIASDGVDDVAVLVNSSPDKLMGLNLSFASGFPVVSNAVLCAKASMLLQNVPPVVLLRFLREHRSEWADNNMDAYSAAAFKVGPCSLSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGVAHSPEDAIMPREMFLLQLCTGMDENAVGTSAELIFAPIDVSFADDAPLLPSGFRIIPLDSGKEASNPNRTLDLASALDIGPTGNKASNDYSGNSGCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSQAGLRTPLGTPEAQTLARWICNSYRCYLGVELLKSNNEGNESLIKSLWHHSDAILCCTLKASPVFTFANQAGLDMLETTLVALQDITLEKIFDDHSRKILCSEFPQIIQQGFACLQGGICLSSMGRPISYERVVAWKVLNEEENAHCICFMFMNWSFV 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0304 840 Pfam MEKHLA domain 697 839 IPR013978 -
Lal25g0304 840 CDD bZIP 71 110 - -
Lal25g0304 840 ProSiteProfiles START domain profile. 153 368 IPR002913 GO:0008289
Lal25g0304 840 CDD START_ArGLABRA2_like 157 372 - -
Lal25g0304 840 CDD homeodomain 19 79 IPR001356 GO:0003677
Lal25g0304 840 Gene3D - 11 86 - -
Lal25g0304 840 SMART HOX_1 16 82 IPR001356 GO:0003677
Lal25g0304 840 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 840 IPR044830 GO:0003700
Lal25g0304 840 Pfam START domain 163 371 IPR002913 GO:0008289
Lal25g0304 840 ProSiteProfiles 'Homeobox' domain profile. 14 78 IPR001356 GO:0003677
Lal25g0304 840 SUPERFAMILY Homeodomain-like 18 81 IPR009057 -
Lal25g0304 840 Coils Coil 84 115 - -
Lal25g0304 840 SUPERFAMILY Bet v1-like 162 370 - -
Lal25g0304 840 Gene3D - 197 381 IPR023393 -
Lal25g0304 840 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 840 - -
Lal25g0304 840 SMART START_1 162 372 IPR002913 GO:0008289
Lal25g0304 840 Pfam Homeodomain 19 77 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0304 Lal-Chr25 2077296 2084736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0304 1 792 Homeobox Transcription Factor Family AT1G52150 84.887 0.0 1397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal25g0304 START 4e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0304 K09338 - zju:107428556 1571.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0304 25 2077296 2084736 Lal25g0304 25 2077296 2084736 ECH
Lal25g0304 25 2077296 2084736 Lal20g1153 20 15974163 15981990 PCT
Lal20g1153 20 15974163 15981990 Lal25g0304 25 2077296 2084736 PCT