Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0298 ATGATACAAAGAACCACTTCTCAAACTTCTACCAACAACAACAAAACAGAGTCAAAAAAACAGAGCAAAAACAGAGCATTGAAAAGCAGAGATTTTAGCAAGAATCCTATATACCATGGTGTTCGAATGCGTAATTGGGGCAAATGGGTATCTGAAATTCGTGAGCCTCGCAAGAAATCTCGCATCTGGCTCGGAACTTTCGATACACCTGAAATGGCAGCAAGAGCACACGATGTTGCAGCTATGAGCATTAAGGGTAACTCACCAATTCTTAACTTTCCAAATATAGCTCACGTGCTTCCAAAACCAGTCACGTGTACTCCACGTGATATTCAAGCTGCGGCTGCAGAAGCTGCATCTATGGTTAAGTTTGACACAGAGAAATGGTTAGAGACAGGGTCCTCTGAGCTGAGTGAGATTGTTGAACTTCCAAATTTAGAAGAAGAAAGCTTTGACTCGGTCGACACAGGAACTGAGTTGATGTTTATAGACTCGGTGGATAGTTTGGTGTACCCATCAATGGGTGATTATGGAATAGAATTCATAATCTGGTACGATCTTACACCATTAGAAAAACGTCTTATTTATTGA 591 0.4095 MIQRTTSQTSTNNNKTESKKQSKNRALKSRDFSKNPIYHGVRMRNWGKWVSEIREPRKKSRIWLGTFDTPEMAARAHDVAAMSIKGNSPILNFPNIAHVLPKPVTCTPRDIQAAAAEAASMVKFDTEKWLETGSSELSEIVELPNLEEESFDSVDTGTELMFIDSVDSLVYPSMGDYGIEFIIWYDLTPLEKRLIY 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0298 196 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Lal25g0298 196 MobiDBLite consensus disorder prediction 18 34 - -
Lal25g0298 196 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Lal25g0298 196 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Lal25g0298 196 CDD AP2 36 95 IPR001471 GO:0003700|GO:0006355
Lal25g0298 196 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Lal25g0298 196 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Lal25g0298 196 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Lal25g0298 196 MobiDBLite consensus disorder prediction 1 17 - -
Lal25g0298 196 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 173 - -
Lal25g0298 196 Pfam AP2 domain 36 86 IPR001471 GO:0003700|GO:0006355
Lal25g0298 196 MobiDBLite consensus disorder prediction 1 34 - -
Lal25g0298 196 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0298 Lal-Chr25 2055874 2056672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0298 1 172 AP2-EREBP Transcription Factor Family AT5G11590 48.980 1.06e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal25g0298 AP2 7.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0298 K09286 - gmx:100784419 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0298 25 2055874 2056672 Lal25g0298 25 2055874 2056672 ECH