Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0296 ATGGCTGGTGGCATAGCATTCGGGCGTTTTGATGATTCTTTCAGTTTAGGTTCTATCAAAGCCTATCTGGCTGAGTTCATCTCAACTTTGCTCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTATGGTAAGTTGACATCAGATGCAGCTCTTGATCCTGCTGGGCTAGTAGCAGTTGCCATAGCTCATGCTTTTGCTCTGTTTGTTGCTGTTTCTGTTGGTGCCAACATTTCTGGGGGTCATGTCAACCCAGCTGTGACATTTGGTTTAGCTATTTCTGGTCAAATTACCATCATCACTGGTATCTTCTACTGGATTTCACAGCTTCTTGGCTCCATAGTGGCTTGCTTTCTCCTCAAGTTTGTCACTGGAGGCTTGGCTATTCCTATCCACAGTGTAGGTGCTGGAGTTGGAGCTTCTGAAGGAGTTGTGACTGAGATAATTATCACATTTGCATTAGTCTACACTGTGTATGCAACAGCAGCTGACCCTAAGAAAGGGTCATTGGGCACCATTGCACCTATTGCCATTGGTTTCATAGTTGGTGCCAATATCTTAGCAGCTGGTCCATTCTCTGGTGGATCAATGAACCCTGCTAGATCATTTGGTCCTGCAGTTGTGAGTGGTGACTTCAGTGGTCACTGGATCTATTGGGTTGGACCATTGATTGGTGGTGGTTTGGCTGGTGCTATATATGGCTATATATTCCTTCCCTCTGACCATGCACCTTTGGCTAGTGATTTTTGA 750 0.4533 MAGGIAFGRFDDSFSLGSIKAYLAEFISTLLFVFAGVGSAIAYGKLTSDAALDPAGLVAVAIAHAFALFVAVSVGANISGGHVNPAVTFGLAISGQITIITGIFYWISQLLGSIVACFLLKFVTGGLAIPIHSVGAGVGASEGVVTEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSGHWIYWVGPLIGGGLAGAIYGYIFLPSDHAPLASDF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0296 249 PANTHER MIP PROTEIN 4 249 - -
Lal25g0296 249 Pfam Major intrinsic protein 16 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal25g0296 249 Gene3D Glycerol uptake facilitator protein. 3 247 IPR023271 -
Lal25g0296 249 SUPERFAMILY Aquaporin-like 14 242 IPR023271 -
Lal25g0296 249 TIGRFAM MIP: MIP family channel proteins 24 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal25g0296 249 PRINTS Major intrinsic protein family signature 20 39 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal25g0296 249 PRINTS Major intrinsic protein family signature 64 88 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal25g0296 249 PRINTS Major intrinsic protein family signature 101 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal25g0296 249 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal25g0296 249 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal25g0296 249 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal25g0296 249 CDD MIP 20 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal25g0296 249 PANTHER AQUAPORIN-8 4 249 IPR034294 -
Lal25g0296 249 ProSitePatterns MIP family signature. 82 90 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0296 Lal-Chr25 2042876 2044611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0296 4 249 Major Intrinsic Protein MIP AT3G16240 82.661 1.37e-143 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0296 K09873 - rcu:8273814 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0296 25 2042876 2044611 Lal25g0296 25 2042876 2044611 ECH