Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0292 ATGTCTAAACCATTGGAACATAATCCATCAATGGATGGAAACTCTAAGAAGATATCTTCTTCTCTTAACTTCAAGGAGACAGAACTCAGGCTTGGCCTCCCAGATTCCCATTTTCATGAGATAAAATCAGATGCTGTAGTTGTGGTGTCTCTTTTTGGCATGGACTTGCATAGTAACAATGTTTCTTCTGTTGCAACTCCTTTGAAGAAGAACCTTGTGGCTGGGGCTAAGAGGGGATTCTCTTATGCTATTGATGGATCTGAGGCAAAAACTAACACTCATGAAAAGAATAATAGTTCATCTGCACAAACCATCAAAGAGGTTGGTAATGGTATAGTTCAGGAAAAGAATAATCATGTTGCTGGAACAAATGAGCATGCTACTGCTCCTGCAGCAAAGGCACAGGTTATAGGGTGGCCACCAATTCGATCTTTTCGAAAGAACACGATGGCTTCAAATTCGACGAAGAATGATGATGAAGGTGAAGGAAAACCAGGATTTGGTTGTCTCTTTGTGAAGGTCAGCATGGATGGAGCACCTTATCTTAGAAAGGTTGATCTGAAAATCTACAGAAACTATATGGAACTTTCTCATGCTCTTGAAAAGATGTTCACTTGCTTTACCATTGGTCAATGCAATTCTCATGGAGTTCCTGTGAAAGATGGATTATGTGAGAATTCTTTGAGGGATCTTCTGAATGGTTCTGAATATGTACTTACATATGAGGATAAAGATGGAGATTGGATGCTAGTAGGTGATGTTCCTTGGGAGATGTTCATTGACTCATGTAGGAGACTAAGGATCATGAAAGGCTCTGAGGCAATTGGGTTAGCTAAGGGCCATGCAAAAATGTAG 855 0.4023 MSKPLEHNPSMDGNSKKISSSLNFKETELRLGLPDSHFHEIKSDAVVVVSLFGMDLHSNNVSSVATPLKKNLVAGAKRGFSYAIDGSEAKTNTHEKNNSSSAQTIKEVGNGIVQEKNNHVAGTNEHATAPAAKAQVIGWPPIRSFRKNTMASNSTKNDDEGEGKPGFGCLFVKVSMDGAPYLRKVDLKIYRNYMELSHALEKMFTCFTIGQCNSHGVPVKDGLCENSLRDLLNGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCRRLRIMKGSEAIGLAKGHAKM 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0292 284 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 279 IPR003311 GO:0005634|GO:0006355
Lal25g0292 284 PANTHER AUXIN-RESPONSIVE PROTEIN 11 279 - -
Lal25g0292 284 SUPERFAMILY CAD & PB1 domains 170 270 - -
Lal25g0292 284 Gene3D - 166 283 - -
Lal25g0292 284 ProSiteProfiles PB1 domain profile. 169 271 IPR000270 GO:0005515
Lal25g0292 284 Pfam AUX/IAA family 26 278 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0292 Lal-Chr25 2016341 2018832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0292 172 274 B3 DNA Binding Superfamily AT2G46530 33.981 7.67e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal25g0292 AUX_IAA 1.8e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0292 K14484 - gmx:100804423 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0292 25 2016341 2018832 Lal25g0292 25 2016341 2018832 ECH