Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0273 ATGTCACCGGAAAGTTGCACCTATTCCTCGGAATCTGACACCATTGATTTTACATTAATGGAGACCGAGCTCACCCTAGGTCTTCCTGGTGTAAAATCTTGCACCAAACGTGGTTTCTTGGACACCATTGATCTTCATCTTGCTACCCCAAGCCATGTTTCAGGAAATAACTTCTTGTGCTCAGCCACTAAATCCCAACCACCCAAGGAACAAATGGTGGGGTGGCCTCCAGTGAGGTCTAGTAGGAAGAATGGAATGAAGAGTTGCAAGTACGTGAAGGTGGCAATGGATGGAGCTCCATATCTCAGAAAAGTGGATCTAGAAATGTATGAGAGTTATGATCAGCTTCTCAGGGCATTAGAGACCATGTTTTCTTGCTTAACCATCAGTAATCATTTGAATGAGAGAAAACTTATGGATAAAGGAAATGGGATTGAATACATGCCCACTTATGAGGACAGAGATGGTGACATGATGTTGCTTGGGGATGTGCCTTGGAAGATGTTTGTTGAATCATGCAAGAGAATAAGGCTAATGATAAGCTCAGAAACCATTGGCTTAGATCCTATGAGTGCTTCAAAATGTAAGGGGAATCAATTAAGAAGAATAAATGGTGCAATGGTAAGGTGTTAA 633 0.4202 MSPESCTYSSESDTIDFTLMETELTLGLPGVKSCTKRGFLDTIDLHLATPSHVSGNNFLCSATKSQPPKEQMVGWPPVRSSRKNGMKSCKYVKVAMDGAPYLRKVDLEMYESYDQLLRALETMFSCLTISNHLNERKLMDKGNGIEYMPTYEDRDGDMMLLGDVPWKMFVESCKRIRLMISSETIGLDPMSASKCKGNQLRRINGAMVRC 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0273 210 Pfam AUX/IAA family 31 189 IPR033389 -
Lal25g0273 210 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 184 IPR003311 GO:0005634|GO:0006355
Lal25g0273 210 SUPERFAMILY CAD & PB1 domains 79 180 - -
Lal25g0273 210 ProSiteProfiles PB1 domain profile. 89 183 IPR000270 GO:0005515
Lal25g0273 210 Gene3D - 84 193 - -
Lal25g0273 210 PANTHER AUXIN-RESPONSIVE PROTEIN 9 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0273 Lal-Chr25 1881650 1883802 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0273 14 201 B3 DNA Binding Superfamily AT4G23980 29.381 2.70e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal25g0273 AUX_IAA 1.3e-51 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0273 K14484 - qsu:112027116 257.684