Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0272 ATGACCAAAGAATTAGGACTTGGACTTGAAATCACGGAACTAAGGTTAGGTCTTCCCGGTGGGGAACCTATGTGTGTTGATAAGAATGAAAAGAAGAGGGTGTTCTCGGAGATTGAGGGTGGCGGTGACGAAAACAGCTCCTCCGATGACCGGAAAATGCCTACGAAGAATCAAATGGTGGGGTGGCCTCCGGTGTGTTCATACCGGAAGAAGAATAGTGTGAATGAAGCTTCAAGACCTTATGTGAAGGTTAGCATGGATGGTGCTCCATTCTTGCGTAAAATTGATTTAGGTTTGCATAAGGGGTACTCACAATTAGCTTTGGCCTTGGAAAAGCTCTTTGGTTGCTATGGAATCGGTGAGGCATTGAAGAATGCAGAGAATTGTGAACAAGTTCCCATTTATGAAGACAAAGATGGTGATTGGATGCTGATTGGAGATGTTCCTTGGGAGATGTTTATTGAATCATGCAAGAGGCTGAGAATTATGAAGAGATCAGATGCAAAGGGTTTTGATATGCAACCAAAAGGGTCTTTAAAGGGATTTATAGAAGGCGTGACAAAGTAA 567 0.4303 MTKELGLGLEITELRLGLPGGEPMCVDKNEKKRVFSEIEGGGDENSSSDDRKMPTKNQMVGWPPVCSYRKKNSVNEASRPYVKVSMDGAPFLRKIDLGLHKGYSQLALALEKLFGCYGIGEALKNAENCEQVPIYEDKDGDWMLIGDVPWEMFIESCKRLRIMKRSDAKGFDMQPKGSLKGFIEGVTK 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0272 188 Gene3D - 73 176 - -
Lal25g0272 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 6 171 - -
Lal25g0272 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 171 IPR003311 GO:0005634|GO:0006355
Lal25g0272 188 MobiDBLite consensus disorder prediction 36 51 - -
Lal25g0272 188 Pfam AUX/IAA family 46 171 IPR033389 -
Lal25g0272 188 SUPERFAMILY CAD & PB1 domains 73 164 - -
Lal25g0272 188 ProSiteProfiles PB1 domain profile. 79 167 IPR000270 GO:0005515
Lal25g0272 188 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0272 Lal-Chr25 1868738 1874259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0272 75 186 B3 DNA Binding Superfamily AT4G23980 34.821 1.37e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal25g0272 AUX_IAA 1.7e-43 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0272 K14484 - gmx:100811879 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0272 25 1868738 1874259 Lal25g0272 25 1868738 1874259 ECH
Lal25g0272 25 1868738 1874259 Lal10g1148 10 18177786 18180294 LSH
Lal25g0272 25 1868738 1874259 Lal8g0226 8 1518838 1520359 LSH