Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0271 ATGAGTGGAGCTTTATCAGGGTTACAAGATCACCTCAAATTAGCAAGAGAATACGCACTCGAAGGAATCTACGACACTTCAATCATCTTCTTCGATGGCGCCATTGCACAAATCAACAAACACCTAAACAGTGTTGATGATCCATTAATCCGTTCAAAATGGATGAACGTGAAGAAAGCACTATCTGAAGAAACAGAAGTAGTGAAGCAACTAGATGCGGAGAGAAATGCTTTTAAGGAAACTCCAAATTCGAATTCAAGAAGGCCTCCTTCACCACCGATATCAGTTTCATCTGTTAAATCTAATTTTGTATTTCAGCCGTTGGATGAGTATCCGACTTCATCATCATCCGGCGGCGGCGGTGGTTTTAATAATCCGATGGATGATCCCGATGTGTGGAGGCCGCCGAGTCGAGATACTTCTAGAAGACCACAGGCCGCGAGGAATTTGAAGAAAGATGGCGCGTGGGCGCGGGGTGCTACTTCTAGAACATCAACAACCGGTGCTGCAGCAACAAACGCTAATGCTCGCGGTGGTGCCAGGCTGAGTAGGGTTAACTCTGGAGCTCGAGGATCGGCGGCAGTGAAGAAAGGGAATTCTTCTGTAAAGTCCAGTAAGACAGATTCAGTTAATGGGGATGGTGATGATGGAAAGTCAAAGAGGCCACAATATGAAGGTCCTGATCCCGACTTGGCAGAAATGCTCGAAAGGGATGTCTTAGAAACCTCTCCCGGAGTCAGATGGGATGATGTTGCTGGCCTCACTGAAGCCAAAAGGCTTCTAGAAGAAGCTGTTGTTCTTCCACTATGGATGCCTGAGTATTTCCAGGGAATTAGGAGGCCGTGGAAAGGTGTTCTCATGTTTGGTCCTCCGGGAACTGGGAAGACACTTCTTGCTAAAGCTGTTGCTACTGAATGTGGTACCACTTTCTTTAATGTTTCTTCTGCTACTTTGGCTTCTAAATGGCGTGGAGAAAGTGAGCGCATGGTACGGTGTTTGTTTGATCTTGCCAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGAGGGGCTTCTGGGGAGCATGAGTCATCCAGAAGGGTGAAGTCTGAACTTTTAGTTCAGGTTGATGGTGTAAATAATACTTCGACGAATGAAGATGGTAGCCGTAAAATAGTAATGGTTTTGGCAGCCACAAACTTCCCATGGGACATAGATGAGGCACTAAGAAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAACTTTGAGAGTCGTAAAGAGCTGATCCGTATCAATTTGAAGACTGTAGAGGCAAGTTACTGTGTTACTGTGGCCACGGACGTCAATATGGATGATGTGGCTCGCCGAACAGAAGGCTATAGTGGAGATGATCTGACTAATGTCTGTCGCGATGCTTCGTTGAATGGTATGAGGCGTAAGATAGCAGGAAAGACTCGTGATGAGATAAAGAACATGCCGAAAGATGAGATTTCAAATGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGAAGAAAGTCCAACGAAGTGTTTCTCAGGCTGACATTGATCGTCATGAGAAGTGGTTTCACGAATTTGGATCGGCATAA 1620 0.45 MSGALSGLQDHLKLAREYALEGIYDTSIIFFDGAIAQINKHLNSVDDPLIRSKWMNVKKALSEETEVVKQLDAERNAFKETPNSNSRRPPSPPISVSSVKSNFVFQPLDEYPTSSSSGGGGGFNNPMDDPDVWRPPSRDTSRRPQAARNLKKDGAWARGATSRTSTTGAAATNANARGGARLSRVNSGARGSAAVKKGNSSVKSSKTDSVNGDGDDGKSKRPQYEGPDPDLAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTSTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEASYCVTVATDVNMDDVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISNDPVAMCDFEEALKKVQRSVSQADIDRHEKWFHEFGSA 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0271 539 Gene3D - 423 515 - -
Lal25g0271 539 MobiDBLite consensus disorder prediction 209 230 - -
Lal25g0271 539 Pfam AAA+ lid domain 450 491 IPR041569 -
Lal25g0271 539 Pfam ATPase family associated with various cellular activities (AAA) 285 422 IPR003959 GO:0005524|GO:0016887
Lal25g0271 539 Gene3D - 1 79 - -
Lal25g0271 539 CDD AAA 279 422 - -
Lal25g0271 539 PANTHER AAA DOMAIN-CONTAINING 4 539 - -
Lal25g0271 539 Gene3D - 243 529 IPR027417 -
Lal25g0271 539 MobiDBLite consensus disorder prediction 193 208 - -
Lal25g0271 539 MobiDBLite consensus disorder prediction 77 122 - -
Lal25g0271 539 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 6 539 IPR028596 GO:0008017|GO:0008568|GO:0051013
Lal25g0271 539 MobiDBLite consensus disorder prediction 159 173 - -
Lal25g0271 539 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 4 539 - -
Lal25g0271 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 525 IPR027417 -
Lal25g0271 539 SMART AAA_5 281 424 IPR003593 -
Lal25g0271 539 ProSitePatterns AAA-protein family signature. 394 413 IPR003960 GO:0005524|GO:0016887
Lal25g0271 539 MobiDBLite consensus disorder prediction 75 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0271 Lal-Chr25 1862111 1866019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0271 237 531 Calmodulin-binding Proteins AT3G56690 39.535 4.51e-49 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0271 K07767 - rcu:8271350 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0271 25 1862111 1866019 Lal25g0271 25 1862111 1866019 ECH
Lal25g0271 25 1862111 1866019 Lal10g1151 10 18201211 18205127 LSH
Lal25g0271 25 1862111 1866019 Lal8g0224 8 1503926 1509789 LSH