Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal25g0271 | ATGAGTGGAGCTTTATCAGGGTTACAAGATCACCTCAAATTAGCAAGAGAATACGCACTCGAAGGAATCTACGACACTTCAATCATCTTCTTCGATGGCGCCATTGCACAAATCAACAAACACCTAAACAGTGTTGATGATCCATTAATCCGTTCAAAATGGATGAACGTGAAGAAAGCACTATCTGAAGAAACAGAAGTAGTGAAGCAACTAGATGCGGAGAGAAATGCTTTTAAGGAAACTCCAAATTCGAATTCAAGAAGGCCTCCTTCACCACCGATATCAGTTTCATCTGTTAAATCTAATTTTGTATTTCAGCCGTTGGATGAGTATCCGACTTCATCATCATCCGGCGGCGGCGGTGGTTTTAATAATCCGATGGATGATCCCGATGTGTGGAGGCCGCCGAGTCGAGATACTTCTAGAAGACCACAGGCCGCGAGGAATTTGAAGAAAGATGGCGCGTGGGCGCGGGGTGCTACTTCTAGAACATCAACAACCGGTGCTGCAGCAACAAACGCTAATGCTCGCGGTGGTGCCAGGCTGAGTAGGGTTAACTCTGGAGCTCGAGGATCGGCGGCAGTGAAGAAAGGGAATTCTTCTGTAAAGTCCAGTAAGACAGATTCAGTTAATGGGGATGGTGATGATGGAAAGTCAAAGAGGCCACAATATGAAGGTCCTGATCCCGACTTGGCAGAAATGCTCGAAAGGGATGTCTTAGAAACCTCTCCCGGAGTCAGATGGGATGATGTTGCTGGCCTCACTGAAGCCAAAAGGCTTCTAGAAGAAGCTGTTGTTCTTCCACTATGGATGCCTGAGTATTTCCAGGGAATTAGGAGGCCGTGGAAAGGTGTTCTCATGTTTGGTCCTCCGGGAACTGGGAAGACACTTCTTGCTAAAGCTGTTGCTACTGAATGTGGTACCACTTTCTTTAATGTTTCTTCTGCTACTTTGGCTTCTAAATGGCGTGGAGAAAGTGAGCGCATGGTACGGTGTTTGTTTGATCTTGCCAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGAGGGGCTTCTGGGGAGCATGAGTCATCCAGAAGGGTGAAGTCTGAACTTTTAGTTCAGGTTGATGGTGTAAATAATACTTCGACGAATGAAGATGGTAGCCGTAAAATAGTAATGGTTTTGGCAGCCACAAACTTCCCATGGGACATAGATGAGGCACTAAGAAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAACTTTGAGAGTCGTAAAGAGCTGATCCGTATCAATTTGAAGACTGTAGAGGCAAGTTACTGTGTTACTGTGGCCACGGACGTCAATATGGATGATGTGGCTCGCCGAACAGAAGGCTATAGTGGAGATGATCTGACTAATGTCTGTCGCGATGCTTCGTTGAATGGTATGAGGCGTAAGATAGCAGGAAAGACTCGTGATGAGATAAAGAACATGCCGAAAGATGAGATTTCAAATGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGAAGAAAGTCCAACGAAGTGTTTCTCAGGCTGACATTGATCGTCATGAGAAGTGGTTTCACGAATTTGGATCGGCATAA | 1620 | 0.45 | MSGALSGLQDHLKLAREYALEGIYDTSIIFFDGAIAQINKHLNSVDDPLIRSKWMNVKKALSEETEVVKQLDAERNAFKETPNSNSRRPPSPPISVSSVKSNFVFQPLDEYPTSSSSGGGGGFNNPMDDPDVWRPPSRDTSRRPQAARNLKKDGAWARGATSRTSTTGAAATNANARGGARLSRVNSGARGSAAVKKGNSSVKSSKTDSVNGDGDDGKSKRPQYEGPDPDLAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTSTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEASYCVTVATDVNMDDVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISNDPVAMCDFEEALKKVQRSVSQADIDRHEKWFHEFGSA | 539 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal25g0271 | 539 | Gene3D | - | 423 | 515 | - | - | |
Lal25g0271 | 539 | MobiDBLite | consensus disorder prediction | 209 | 230 | - | - | |
Lal25g0271 | 539 | Pfam | AAA+ lid domain | 450 | 491 | IPR041569 | - | |
Lal25g0271 | 539 | Pfam | ATPase family associated with various cellular activities (AAA) | 285 | 422 | IPR003959 | GO:0005524|GO:0016887 | |
Lal25g0271 | 539 | Gene3D | - | 1 | 79 | - | - | |
Lal25g0271 | 539 | CDD | AAA | 279 | 422 | - | - | |
Lal25g0271 | 539 | PANTHER | AAA DOMAIN-CONTAINING | 4 | 539 | - | - | |
Lal25g0271 | 539 | Gene3D | - | 243 | 529 | IPR027417 | - | |
Lal25g0271 | 539 | MobiDBLite | consensus disorder prediction | 193 | 208 | - | - | |
Lal25g0271 | 539 | MobiDBLite | consensus disorder prediction | 77 | 122 | - | - | |
Lal25g0271 | 539 | Hamap | Meiotic spindle formation protein mei-1 [mei-1]. | 6 | 539 | IPR028596 | GO:0008017|GO:0008568|GO:0051013 | |
Lal25g0271 | 539 | MobiDBLite | consensus disorder prediction | 159 | 173 | - | - | |
Lal25g0271 | 539 | PANTHER | KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 | 4 | 539 | - | - | |
Lal25g0271 | 539 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 236 | 525 | IPR027417 | - | |
Lal25g0271 | 539 | SMART | AAA_5 | 281 | 424 | IPR003593 | - | |
Lal25g0271 | 539 | ProSitePatterns | AAA-protein family signature. | 394 | 413 | IPR003960 | GO:0005524|GO:0016887 | |
Lal25g0271 | 539 | MobiDBLite | consensus disorder prediction | 75 | 230 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal25g0271 | Lal-Chr25 | 1862111 | 1866019 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal25g0271 | 237 | 531 | Calmodulin-binding Proteins | AT3G56690 | 39.535 | 4.51e-49 | 180 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal25g0271 | K07767 | - | rcu:8271350 | 838.95 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal25g0271 | 25 | 1862111 | 1866019 | Lal25g0271 | 25 | 1862111 | 1866019 | ECH | |
Lal25g0271 | 25 | 1862111 | 1866019 | Lal10g1151 | 10 | 18201211 | 18205127 | LSH | |
Lal25g0271 | 25 | 1862111 | 1866019 | Lal8g0224 | 8 | 1503926 | 1509789 | LSH |