Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal25g0261 | ATGGAATCTGAAAAAAGATTGAAACTTTCATCACCATCTTCCTCAACATTCACAACCCCAATTCCAAATCATCTTCATGTTGATGATTTTTATAAGACACAACTTTGCAGAAAATTCAGAGAGGGTTTCTGCACTTTTGGTTCTGAATGCAGATATGCTCATGGCATTGCAGAACTTAAACCAAGACAACAACAACAACAACTCTGTAGAATGTTTCTTCACAACAAACAATGCTCATATGGTCATAGCTGTCGTTTCATTCATGTTAATGCTAATCCAAACTTTTCTCATGGATCACAACCTCAAGTAGAGAAAGTTGATGGTTACTCTTCTGCAAAATGCACCACAATGCAAACTTCTGCTGCTGCTACAAATGTCTCAACTAGTTCTTTGCAAAAGAATGAACCATCTTCATACATTTCTCCTAGAGAACATCCACAACTACATGTAATGCAAACTTCTACTGCTGCTACAAATGCCTCAACCACAGGTTCTTTGCATAAGTATGAACAAGATGGTGTCACCAAGTTCATATTCAAGCAAAATAACATACACAAGATAAGTGGCATCTATGCTGATTGGATTTAA | 588 | 0.3673 | MESEKRLKLSSPSSSTFTTPIPNHLHVDDFYKTQLCRKFREGFCTFGSECRYAHGIAELKPRQQQQQLCRMFLHNKQCSYGHSCRFIHVNANPNFSHGSQPQVEKVDGYSSAKCTTMQTSAAATNVSTSSLQKNEPSSYISPREHPQLHVMQTSTAATNASTTGSLHKYEQDGVTKFIFKQNNIHKISGIYADWI | 195 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal25g0261 | 195 | ProSiteProfiles | Zinc finger C3H1-type profile. | 30 | 57 | IPR000571 | GO:0046872 | |
Lal25g0261 | 195 | SUPERFAMILY | CCCH zinc finger | 63 | 88 | IPR036855 | GO:0046872 | |
Lal25g0261 | 195 | Gene3D | - | 65 | 92 | - | - | |
Lal25g0261 | 195 | Gene3D | - | 24 | 62 | - | - | |
Lal25g0261 | 195 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 27 | 194 | IPR045877 | GO:0003729 | |
Lal25g0261 | 195 | PANTHER | ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN | 27 | 194 | - | - | |
Lal25g0261 | 195 | Pfam | CCCH-type zinc finger | 68 | 88 | IPR041367 | - | |
Lal25g0261 | 195 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 31 | 55 | IPR000571 | GO:0046872 | |
Lal25g0261 | 195 | SUPERFAMILY | CCCH zinc finger | 30 | 60 | IPR036855 | GO:0046872 | |
Lal25g0261 | 195 | ProSiteProfiles | Zinc finger C3H1-type profile. | 63 | 91 | IPR000571 | GO:0046872 | |
Lal25g0261 | 195 | SMART | c3hfinal6 | 30 | 56 | IPR000571 | GO:0046872 | |
Lal25g0261 | 195 | SMART | c3hfinal6 | 63 | 90 | IPR000571 | GO:0046872 |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal25g0261 | 32 | 88 | C3H Transcription Factor Family | AT1G68200 | 45.161 | 2.99e-12 | 62.4 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Lal25g0261 | zf-CCCH | 2e-08 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal25g0261 | - | - | lang:109351184 | 296.975 |