Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0261 ATGGAATCTGAAAAAAGATTGAAACTTTCATCACCATCTTCCTCAACATTCACAACCCCAATTCCAAATCATCTTCATGTTGATGATTTTTATAAGACACAACTTTGCAGAAAATTCAGAGAGGGTTTCTGCACTTTTGGTTCTGAATGCAGATATGCTCATGGCATTGCAGAACTTAAACCAAGACAACAACAACAACAACTCTGTAGAATGTTTCTTCACAACAAACAATGCTCATATGGTCATAGCTGTCGTTTCATTCATGTTAATGCTAATCCAAACTTTTCTCATGGATCACAACCTCAAGTAGAGAAAGTTGATGGTTACTCTTCTGCAAAATGCACCACAATGCAAACTTCTGCTGCTGCTACAAATGTCTCAACTAGTTCTTTGCAAAAGAATGAACCATCTTCATACATTTCTCCTAGAGAACATCCACAACTACATGTAATGCAAACTTCTACTGCTGCTACAAATGCCTCAACCACAGGTTCTTTGCATAAGTATGAACAAGATGGTGTCACCAAGTTCATATTCAAGCAAAATAACATACACAAGATAAGTGGCATCTATGCTGATTGGATTTAA 588 0.3673 MESEKRLKLSSPSSSTFTTPIPNHLHVDDFYKTQLCRKFREGFCTFGSECRYAHGIAELKPRQQQQQLCRMFLHNKQCSYGHSCRFIHVNANPNFSHGSQPQVEKVDGYSSAKCTTMQTSAAATNVSTSSLQKNEPSSYISPREHPQLHVMQTSTAATNASTTGSLHKYEQDGVTKFIFKQNNIHKISGIYADWI 195
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0261 195 ProSiteProfiles Zinc finger C3H1-type profile. 30 57 IPR000571 GO:0046872
Lal25g0261 195 SUPERFAMILY CCCH zinc finger 63 88 IPR036855 GO:0046872
Lal25g0261 195 Gene3D - 65 92 - -
Lal25g0261 195 Gene3D - 24 62 - -
Lal25g0261 195 PANTHER CCCH ZINC FINGER/TIS11-RELATED 27 194 IPR045877 GO:0003729
Lal25g0261 195 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN 27 194 - -
Lal25g0261 195 Pfam CCCH-type zinc finger 68 88 IPR041367 -
Lal25g0261 195 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 31 55 IPR000571 GO:0046872
Lal25g0261 195 SUPERFAMILY CCCH zinc finger 30 60 IPR036855 GO:0046872
Lal25g0261 195 ProSiteProfiles Zinc finger C3H1-type profile. 63 91 IPR000571 GO:0046872
Lal25g0261 195 SMART c3hfinal6 30 56 IPR000571 GO:0046872
Lal25g0261 195 SMART c3hfinal6 63 90 IPR000571 GO:0046872
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0261 32 88 C3H Transcription Factor Family AT1G68200 45.161 2.99e-12 62.4
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal25g0261 zf-CCCH 2e-08 CL0537
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0261 - - lang:109351184 296.975