Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0250 ATGGCTCTTATATCTCTCTCACTTCTTCCCTCTCTTCTCCCACACTCTTCTTCTTCTCCTTCTTCATGTTCTGGTGTGCTTCATTTCCGTTCCTATAACAACAACAACAACAACTTCATTTCGATCAATTCATCTTCTTCTTTCACTTCTTCAACTTCTAATCTCACTCGAAATCGTACTCGTCGCCGATTTCAGACGCTAGTCGTAGCTGCTTCCGGTGATTACTATGCTACTCTTGGAGTCCCTAAATCTGCTACCGTTAAGGAAATTAAATCTGCTTATCGAAAATTAGCTCGTCAGTACCATCCTGATGTGAACAAGGAACCTGGAGCTACTGACAAATTCAAAGAGATTAGTGCTGCATATGAGGTGTTATCAGATGATAAAAAGAGGGCTTTGTATGATCAATACGGTGAGGCTGGAGTTAAGAGCACAGTGGGAGGAGCATCAAGTGGCTATACGACCAATCCATTTGATTTATTTGAGACTTTTTTTGGGCCAAATATGGGTGGCTTTGCTGGCATGGATCCAACTGGATTTGGAACACAGCGTCGTAGTACCGTTACTAAGGGTGAAGACATCCGTTATGATTTCTCCTTGGATTTTTCTGAGGCAATTTTTGGAACAGAGAAAGAATTTGAGCTTTCCCATTTAGAAACATGTGAAGTCTGTACGGGTACTGGAGCAAAGATAGGCTCCAAGAAGAGAATATGTTCTACTTGTGGCGGAAGGGGTCAGGTGATGAGGACTGAGCAAACACCTTTTGGGTTGTTTTCACAGGTTTCGGTATGTCCAAACTGTGGAGGGAATGGTGAAGTCATATCTGAATATTGTCGTAAATGCAGCGGTGAAGGACGTTCACGGGTCAAGAAAAATATTAAAGTTAAAGTTCCTCCTGGGGTTAGCTCAGGCAGTATTCTAAGAGTTGCTAGGGAGGGTGATGCTGGACCAAGCGGGGGCCCGCCTGGAGATCTTTATGTATATCTCAATGTGGAAGAGATACCCGGAATTCAAAGAGATGACATAAATCTCCGCTCAACAATATCCATCAGTTACCTAGATGCCATAATCGGGGCTATTGTGAAGGTTAAGACAGTTGAAGGCACTTCTGAACTACAAATACCTCCTGGTACCCAACCTGGAGATGTCCTCGTCCTTGCAAGGAAAGGTGTACCAAAATTAAACAGACCATCAATACGTGGTGACCACTTATTTACAGTTAAAGTTACTATACCGAAACGGATTAGTACAAAGGAACGTGAGTTGCTTGAAGAACTTGCTTCTCTAGGCACAACAAGTAGCCGTTCAAGATCTCGTCCTAAAACTAACTCTTCCAGAAGTAGCGAAGGCCCTTCAGCTCAAAAGGCTGAAAGTCCAACAGAAACAGTTTCAGAAGAAATTGAACAAAAAGAGGACCAAAATGATGTATGGAAGGCATTAAAGGGCTTTGCTGGGTCCGTAGCAAATGGAGCTCTAAAGTGGCTGAAAGATAATCTCTAG 1500 0.4293 MALISLSLLPSLLPHSSSSPSSCSGVLHFRSYNNNNNNFISINSSSSFTSSTSNLTRNRTRRRFQTLVVAASGDYYATLGVPKSATVKEIKSAYRKLARQYHPDVNKEPGATDKFKEISAAYEVLSDDKKRALYDQYGEAGVKSTVGGASSGYTTNPFDLFETFFGPNMGGFAGMDPTGFGTQRRSTVTKGEDIRYDFSLDFSEAIFGTEKEFELSHLETCEVCTGTGAKIGSKKRICSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGNGEVISEYCRKCSGEGRSRVKKNIKVKVPPGVSSGSILRVAREGDAGPSGGPPGDLYVYLNVEEIPGIQRDDINLRSTISISYLDAIIGAIVKVKTVEGTSELQIPPGTQPGDVLVLARKGVPKLNRPSIRGDHLFTVKVTIPKRISTKERELLEELASLGTTSSRSRSRPKTNSSRSSEGPSAQKAESPTETVSEEIEQKEDQNDVWKALKGFAGSVANGALKWLKDNL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0250 499 ProSiteProfiles dnaJ domain profile. 74 138 IPR001623 -
Lal25g0250 499 Pfam DnaJ C terminal domain 194 412 IPR002939 -
Lal25g0250 499 MobiDBLite consensus disorder prediction 427 473 - -
Lal25g0250 499 ProSitePatterns Nt-dnaJ domain signature. 115 134 IPR018253 -
Lal25g0250 499 Gene3D - 337 429 - -
Lal25g0250 499 Gene3D - 221 285 - -
Lal25g0250 499 CDD DnaJ 74 127 IPR001623 -
Lal25g0250 499 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 61 441 - -
Lal25g0250 499 MobiDBLite consensus disorder prediction 427 460 - -
Lal25g0250 499 PRINTS DnaJ domain signature 76 94 IPR001623 -
Lal25g0250 499 PRINTS DnaJ domain signature 94 109 IPR001623 -
Lal25g0250 499 PRINTS DnaJ domain signature 110 130 IPR001623 -
Lal25g0250 499 PRINTS DnaJ domain signature 130 149 IPR001623 -
Lal25g0250 499 Gene3D DnaJ domain 71 176 IPR036869 -
Lal25g0250 499 CDD DnaJ_zf 221 285 IPR001305 GO:0031072|GO:0051082
Lal25g0250 499 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 208 287 IPR036410 -
Lal25g0250 499 SUPERFAMILY HSP40/DnaJ peptide-binding domain 189 332 IPR008971 GO:0006457|GO:0051082
Lal25g0250 499 ProSiteProfiles Zinc finger CR-type profile. 208 290 IPR001305 GO:0031072|GO:0051082
Lal25g0250 499 PANTHER MOLECULAR CHAPERONE HSP40/DNAJ FAMILY PROTEIN 61 441 - -
Lal25g0250 499 SUPERFAMILY Chaperone J-domain 70 180 IPR036869 -
Lal25g0250 499 Pfam DnaJ domain 74 135 IPR001623 -
Lal25g0250 499 SUPERFAMILY HSP40/DnaJ peptide-binding domain 338 423 IPR008971 GO:0006457|GO:0051082
Lal25g0250 499 TIGRFAM DnaJ_bact: chaperone protein DnaJ 74 428 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lal25g0250 499 Hamap Chaperone protein DnaJ [dnaJ]. 71 498 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lal25g0250 499 SMART dnaj_3 73 130 IPR001623 -
Lal25g0250 499 Pfam DnaJ central domain 221 285 IPR001305 GO:0031072|GO:0051082
Lal25g0250 499 CDD DnaJ_C 192 415 - -
Lal25g0250 499 Gene3D - 191 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0250 Lal-Chr25 1707227 1714135 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0250 75 181 C2H2 Transcription Factor Family AT1G74250 37.815 1.41e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0250 K03686 - gmx:100798567 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0250 25 1707227 1714135 Lal25g0250 25 1707227 1714135 ECH