Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0239 ATGGAGCAATCATGGGAAGAATGGCCTCTTCATATACTAATGGAAATGGGTGAGGATGATGATTTCATAGAGCAATGTTACAATGATGAGCATAATGATGAGTTGTTCATCAAAGACATCCTACATGATCCACCTTTCTCTTCTCAATCTCTTCACAATCCTTATAATTCCAATGCTGTCCAAAACAACATGGCAACCACAACCATAGTTTCCGGTGTGAAAGACAGTGTGACAGGCGATGAAACTATAGATCTAGATAGGTCTGGGAATAGGCATCAGAACTCTTCTACTCCAAAATCATACATTTTGTCATTTGATAACTCAACCATAATTCCAGCTACTCCAGAACCTATCCTTGGTGATGGGAAAATTATGGGAATAAGTTGTTCTAAAACTAATAATTCACCATTGTCCACTAGAAAAAGGACACTGGAAAATAGAAATATTGAACTAAAACCAAAAGGCAATAATTACGAAGGAGGAAAGAAGAATAGAAGCGATTCTAAGACTATGGATCACATAATTGCAGAAAGGAAAAGGAGACGGGAACTTACTCAGAAGTTTATAGCACTTTCAGCTACTATTCCTGATTTGAAGAAGACAGACAAGGTTTCTATACTCCAAGAAGCTACCAATTACGTGAAACAACTTCAAGAACGTGTCTCTAAGCTAGAAAAAGTGAACAAGGGTAGCAATGAATCAATTATATTCCTAAATAAGATTGAAATGTTTGAAGATGAAAATGGCACTTCTAGTGAAACAAGTTCTGAGGATTGTTGTAGACCCATTATTGAGTTACTCCCTGATGTTGAAGCAAGAGTTTTTGGGAATGAAGTACTTATTAAGATTCATTGTGAGAAGGAAAATGGCATTGTGTATGAAATATTTGATCAGCTTCAAAACTTTCATCTTTGTGTCACTGGTAGCAGTGTGTTACCCTTTGGTAACTCTACTCTTGGTATTACTATTATAGCTCAGATGTGTGAGGCGTACAAAATGTCAGTGAATGATGTAGTGAAAAACCTAAGGCAAGTTCTATTGAAAAACATACCTTGTAATACGGATCCATTCTACTCTACACTAAAATATCTTTAG 1095 0.3616 MEQSWEEWPLHILMEMGEDDDFIEQCYNDEHNDELFIKDILHDPPFSSQSLHNPYNSNAVQNNMATTTIVSGVKDSVTGDETIDLDRSGNRHQNSSTPKSYILSFDNSTIIPATPEPILGDGKIMGISCSKTNNSPLSTRKRTLENRNIELKPKGNNYEGGKKNRSDSKTMDHIIAERKRRRELTQKFIALSATIPDLKKTDKVSILQEATNYVKQLQERVSKLEKVNKGSNESIIFLNKIEMFEDENGTSSETSSEDCCRPIIELLPDVEARVFGNEVLIKIHCEKENGIVYEIFDQLQNFHLCVTGSSVLPFGNSTLGITIIAQMCEAYKMSVNDVVKNLRQVLLKNIPCNTDPFYSTLKYL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0239 364 Gene3D - 160 233 IPR036638 GO:0046983
Lal25g0239 364 SMART finulus 174 223 IPR011598 GO:0046983
Lal25g0239 364 PANTHER BHLH TRANSCRIPTION FACTOR 1 349 - -
Lal25g0239 364 Coils Coil 207 234 - -
Lal25g0239 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Lal25g0239 364 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 349 - -
Lal25g0239 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 235 IPR036638 GO:0046983
Lal25g0239 364 MobiDBLite consensus disorder prediction 80 99 - -
Lal25g0239 364 Pfam Helix-loop-helix DNA-binding domain 172 218 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0239 Lal-Chr25 1648566 1653637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0239 157 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.615 1.09e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal25g0239 HLH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0239 - - aprc:113856039 332.798