Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0237 TCTCAAAATAAACAAGTAGTAATAATAATTAACAACAACATGACAAGCCTCGAAGATATTAAGAAGGAAACAGTGGATCTTGAACGTATACCTGTTGATGAAGTGTTCAGAGAATTGAACTGTTCCAAAGAAGGACTCACCAATGAAGAAGGCCAAAAGAGACTCGAAGTTTTTGGCCCCAACAAGTTGGAAGAAAAGAAGGAAAGCAAGTTGCTCAAGTTCTTGGGCTTTATGTGGAACCCTCTTTCATGGGTCATGGAAATTGCTGCTATCATGGCCATTGCATTGGCAAATGGAGGAGGTCAGCCACCAGATTGGCAGGATTTTGTTGGAATAATGGTGCTGTTAGTTATCAACTCTACTATTAGCTTTATAGAAGAAAACAATGCAGGCAATGCAGCTGCAGCACTTATGGCAGGTCTTGCTCCCAAAACCAAGGCTATTGTCATTGCAACTGGGGTTCACACCTTCTTTGGTAAGGCTGCTCACTTGGTTGATAGCACTAACCAAGTTGGTCACTTCCAAAAGGCCAGAGATGGCATTACAGAGGTACATTTCCTTCCCTTTAATCCGGTGGACAAGCGTACAGCGATAACATACATAGACGCTGAGGGTACTTGGCACCGAGTTAGCAAAGGGGCACCAGAGCAAATTATAGAACTTTGCAATCTCAGGGAAGAGGTGAAGAGGAAAGCTATTTCCATTATTGATAAATTTGCTGAGCGCGGTCTTCGTTCCCTTGCTGTTTCCAGACAAGTAGTGCCAGAAAAGACCAAGGAGAGTGCAGGAGCACCATGGCAATTTGTGGGTCTATTGCCTCTCTTTGATCCACCAAGGCATGACAGTGCGGAGACCATTAGGCGCGCTCTCCATCTCGGCGTGAATGTTAAGATGATTACTGGTGACCAGCTAGCTATTGGAAAGGAAACTGGTAGAAGGCTTGGCATGGGAAGTAACATGTACCCTTCTTCATCACTCCTTGGCCAGAACAAGGATGAGTCTGTTGCATCTCTTCCAATTGATGAACTTATTGAGAAAGCTGATGGCTTTGCTGGTGTATTCCCTGAACACAAATATGAGATTGTGAAGAGACTCCAGGATAGGAAACACATATGTGGGATGACTGGTGATGGTGTGAATGATGCTCCTGCCTTGAAAAGGGCAGATATCGGAATTGCAGTGGCTGATGCAACCGATGCAGCTCGAGGTGCATCTGACATAGTCCTTACCGAGCCTGGTTTGAGTGTCATTGTGAGTGCAGTTTTGACAAGTAGAGCCATCTTTCAGAGGATGAAAAACTACACCATATATGCTGTTTCTATAACAATCCGAATTGTGCTCGGCTTTTTGCTCATTGCTCTAATATGGAAATTTGATTTCTCACCTTTCATGGTTTTGGTAATTGCTATACTAAATGATGGCACCATCATGACCATTTCCAAGGATAGGGTTAAGCCATCTCCATCACCTGATTCATGGAAGTTGAGGGAGATTTTTAGCACAGGAGTAGTGCTCGGTGCCTACCTCGCTATTATGACTGTTGTCTTCTTCTGGGCTGCTCATGCATCTAACTTCTTCTCGGACAAATTTGGTGTGAGATCCATCAGGGACAATGACCATGAGCTCACAGCAGCTGTTTACCTTCAAGTGAGTATTGTAAGTCAGGCTCTCATTTTCGTTACAAGGTCGAGGAGCTGGTCTTACGTCGAACGCCCTGGCCTACTTCTTATTGTTGCCTTTCTTATAGCACAACTTATTGCAACAATCATAGCTGTGTATGCAAATTGGGGCTTTGCAAGGATCAAAGGAATTGGATGGGGTTGGGCTGGTGTCATTTGGCTCTACAGCATTATTTTCTATATACCTTTGGATGTTCTTAAATTCATCATCCGATATGCCTTGAGTGGCAAGGCATGGAATAATGTTACTGAGAGCAGGGTTGCTTTCACCTCGAAGAAGGATTATGGAAGGGGTGAGAGAGAAGCACAATGGGCTACAGCTCAACGCACACTCCATGGTCTCAATCCTCCTGGAACAGAAGAAATATTGAATGAAAAGAATGAGTATAGGGAATTATCTGAACTTGCTGAACAAGCTAAGAAACGTGCTGAAGTTGCAAGGTTGAGAGAGCTTCACACACTTAAGGGACATGTTGAGTCTGTGGTGAAACTAAAGGGACTTGATATTGAGACAATTCAGCAACATTATACTGTATAG 2217 0.4375 SQNKQVVIIINNNMTSLEDIKKETVDLERIPVDEVFRELNCSKEGLTNEEGQKRLEVFGPNKLEEKKESKLLKFLGFMWNPLSWVMEIAAIMAIALANGGGQPPDWQDFVGIMVLLVINSTISFIEENNAGNAAAALMAGLAPKTKAIVIATGVHTFFGKAAHLVDSTNQVGHFQKARDGITEVHFLPFNPVDKRTAITYIDAEGTWHRVSKGAPEQIIELCNLREEVKRKAISIIDKFAERGLRSLAVSRQVVPEKTKESAGAPWQFVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGQNKDESVASLPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLIALIWKFDFSPFMVLVIAILNDGTIMTISKDRVKPSPSPDSWKLREIFSTGVVLGAYLAIMTVVFFWAAHASNFFSDKFGVRSIRDNDHELTAAVYLQVSIVSQALIFVTRSRSWSYVERPGLLLIVAFLIAQLIATIIAVYANWGFARIKGIGWGWAGVIWLYSIIFYIPLDVLKFIIRYALSGKAWNNVTESRVAFTSKKDYGRGEREAQWATAQRTLHGLNPPGTEEILNEKNEYRELSELAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0237 738 Gene3D - 687 738 - -
Lal25g0237 738 SMART Cation_ATPase_N_a_2 26 98 IPR004014 -
Lal25g0237 738 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 350 464 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal25g0237 738 Gene3D - 77 147 - -
Lal25g0237 738 Gene3D - 375 633 - -
Lal25g0237 738 SUPERFAMILY HAD-like 200 422 IPR036412 -
Lal25g0237 738 Gene3D - 148 281 IPR023299 GO:0000166
Lal25g0237 738 PRINTS P-type cation-transporting ATPase superfamily signature 270 281 - -
Lal25g0237 738 PRINTS P-type cation-transporting ATPase superfamily signature 292 302 - -
Lal25g0237 738 PRINTS P-type cation-transporting ATPase superfamily signature 375 394 - -
Lal25g0237 738 PRINTS P-type cation-transporting ATPase superfamily signature 398 410 - -
Lal25g0237 738 Pfam Cation transporter/ATPase, N-terminus 30 92 IPR004014 -
Lal25g0237 738 PRINTS H+-transporting ATPase (proton pump) signature 232 250 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal25g0237 738 PRINTS H+-transporting ATPase (proton pump) signature 347 363 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal25g0237 738 PRINTS H+-transporting ATPase (proton pump) signature 375 391 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal25g0237 738 PRINTS H+-transporting ATPase (proton pump) signature 406 431 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal25g0237 738 PRINTS H+-transporting ATPase (proton pump) signature 547 568 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal25g0237 738 Coils Coil 682 709 - -
Lal25g0237 738 SUPERFAMILY Calcium ATPase, transmembrane domain M 26 634 IPR023298 -
Lal25g0237 738 Pfam haloacid dehalogenase-like hydrolase 268 389 - -
Lal25g0237 738 PANTHER CALCIUM-TRANSPORTING ATPASE 15 147 - -
Lal25g0237 738 PANTHER CALCIUM-TRANSPORTING ATPASE 146 176 - -
Lal25g0237 738 PANTHER CALCIUM-TRANSPORTING ATPASE 176 714 - -
Lal25g0237 738 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 176 714 - -
Lal25g0237 738 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 146 176 - -
Lal25g0237 738 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 15 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0237 Lal-Chr25 1636490 1643577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0237 171 738 Primary Pumps ATPases AT3G42640 81.690 0.0 974
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0237 K01535 - gmx:100782329 1016.53