Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0228 ATGGATGTTGATTCACAACCAACTATGGAAGAAACAATTTTGGTGGGTGATGATCTAATGACAGGTCCACCATCACCTGTTGTGCCACCTGAAATAGCTTCTCATGTGCTCCAAGGTGTTGATCTTTGTGATGGAATCCTCAAAAATCTGTTTTTGTGTTTGCAGATCAATGACATCGAACCATTCTGTCAAGACGAGCTTGCTCTGTATAAACAATGTTCTGAAAGAAGGGATAAGGAGATAAGGAAGCGTCTTCAAGATAGTGAACACAAATTGGGTTCATCAATGCCTTTAGATAAAGCCAAAGAGAGGACTGCTCAGCTCGAGGCAGAAGTTACAACATTGGAGAGACGTCTGATTCTTGCTAGTGGAGCTGAGGGCATGGAAGGTTTCCGCCAAAGATGGAGCTTGCATGGCCGCCTTACTGATTCCAAAAAAAGGTTGGAGGCCTTAAAGCAGGATATGAAGGTCATCGCTGCTTATTTGTTGTCCGTTTTGGGAGGGAACGAAACCCCTTCATCTCATGATCTCAAATCTATCCTTGCCTCAGTTGGAGCTGAGGCTGAGGAGGAGAATATTGAGCTGCTCTTGAACGAAGTTAAGGGCAAAAGTGTTGTTGAACTAATTGCTAGTGGAAGAGAGAAGTTGGCTTCAGTACCTTCCGGAGGTGGTGCGGTTGCTGTAGCTGCTGCACCTGCAGGAAGTGCTGGTGCTGCTGCACCTGCTGCCGAAGCAAAGGAGGAAAAGAAGGTGGAAGAGAAAGAGGAGTCTGATGATGATATGGGCTTCAGTTTATTCGACTAG 804 0.4565 MDVDSQPTMEETILVGDDLMTGPPSPVVPPEIASHVLQGVDLCDGILKNLFLCLQINDIEPFCQDELALYKQCSERRDKEIRKRLQDSEHKLGSSMPLDKAKERTAQLEAEVTTLERRLILASGAEGMEGFRQRWSLHGRLTDSKKRLEALKQDMKVIAAYLLSVLGGNETPSSHDLKSILASVGAEAEEENIELLLNEVKGKSVVELIASGREKLASVPSGGGAVAVAAAPAGSAGAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0228 267 CDD Ribosomal_P2 155 267 IPR044076 GO:0002182|GO:0003735|GO:0022625
Lal25g0228 267 Hamap 50S ribosomal protein L12 [rpl12]. 156 267 IPR027534 GO:0003735|GO:0005840|GO:0006414
Lal25g0228 267 Coils Coil 98 118 - -
Lal25g0228 267 PANTHER OS01G0191000 PROTEIN 1 156 - -
Lal25g0228 267 Pfam 60s Acidic ribosomal protein 172 266 - -
Lal25g0228 267 Gene3D - 154 212 IPR038716 -
Lal25g0228 267 MobiDBLite consensus disorder prediction 237 267 - -
Lal25g0228 267 MobiDBLite consensus disorder prediction 243 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0228 Lal-Chr25 1550668 1557107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0228 155 267 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 66.372 2.05e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0228 - - qsu:112027794 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0228 25 1550668 1557107 Lal25g0228 25 1550668 1557107 ECH