Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0210 ATGACTATTGCTGGTGTGCACAGTGTGGCTGTGATTGACTCTACTTTCCTTAGGGACTCCCCTTCTCAGTCACCCGGGAGGCGAGGAGATGGAGAGAGAGGAAGCTCTCAGCCATCTTCGATCTTGCAAATATGGCGAGAGATTGAAGATGAGCGTGCGGGGAGTCAAGTTCAAGGAGGATCTGGAGAAACGTTGCTTCAAGAAAGAAGTGATGAGTTGGTTCCGGACCAATCTCAGGAAAATATGCCTGATATCCGTCAAAGAGAAGGGCATATGATAGGAGATGCAGATCTGGGGGAGAATGAATCTGAAATATATTCACAGTTACAAAGTCAGGGTGAGTCACATGATGAACAGGAGGAATTAAACAATCCTAGTTCTGAAAACTCTCATGATTTAGGAGAAGTTGAAAGGGAAAGAGTGAGGCAGATTTTCAGGGAGTGGAAGATTAGTGGTGATAGGGATCATGCATCAAATATTTACCGAGGAAATAGTGGCTCAAGGGGAGAATGGCTTGAGGAAGTTGAGCAGGAAAGGGTGAGTGTCACGAGGGACTTGGTACAAACAAGTGGCCAGCAGAGCGCTGTTTCTTCTGGGGATAATAAGGAAGAACGGTCTTCTGTAATTGGTACCCAAGTTGAAAGTGTACGTGATGGGTTTGTTGTTAATCAGAATGAGGGCCAACCTGAGCATACACGAAGGGGAATCCGCAAATTATGTGGCCGACAAGTTCTACTTGATATGCTTAAGAAGGCTGAGATGGAAAGACAGAGAGAAGTTCAGGAATTGTTGGACCATCGGGCCGTTTCTCATTTCCCCCATCGCAATCGCATCCAGGCATTGCTCAGAGGAAGGTTCTTGAGAAATGACAGATCAGTTGATAATAACAGGTCCTTTTCCATTGCGGAAAGTGAATTAGGCTTATTGAGGAAAAAACAGACTGTATCAGGTCTAAGGGAAGGATTCTTTTCTAGAAAAGACAATTCTGGTAGCAGTCAAGTAATGTGCAACCTATCTGATACCTCATCTGTCAGTGATATTGATGTAAATACCATTGAAAACACCGGAGCTAGCAGTTTGCATATGGTCCGAACTATACATTCTGAACAATCAGATGCTGATAACAGGGGAAGTGATGATAGAACTGGGATATCAGGTGGTCAAAATTGTTCACTAGGAATTGCTTGTGAAAATTTAGATTGGCAAGATTCTAATGCTAATGTAGAACCAAGAGATTGGGAATCATCATCTAGTATTGGGGTCACAAGAGGTGATAGCAGTGAACAAAATATTGATATGATGCCAACTGAAGGCACTGCTAATGATCCTGCCCAACAAAGCTTGCAAATGGAAGATACCGGGCATAGCAATATGCAGGAACTAACTGGTGTGCATGCTGAACAACCAGATGTGATTGATATAATGGATGATGAAAGCAATTTATCAAATCACAACATTCATGTAGAGGGCAATATTGTTGAATGGAGAAATAGCACTGAGGAAAGTGTAGATGGTAATCAGCTCAGTAGCACATCAAATGAATGGCCCCAAAACATTTTAGGAGATGGTGTAAATTCTCGTCTGCCAGAAGCTCCTGAACCTGAAATGTGGCAAGAAGATGGTGACTTTCAAGAGGCTGTGGAGATTTGGTTAGGAGCACCTTCCGATCACGAAATAGCTCAAGATGGTAGAATTCATGGATTTTATTTTCCAGATGACAACAATGTGTACAGTGTTGAACTCAGGGAACTGTTAAGTAGGAGAAGTGTCTCAAACCTCCTTCATAGCAGCTTTCGGGAAAGTCTTGACCAATTGATACAATCATATGTAGAAAGGCAAGGTCATGCTCATGTTCAGTGGGAGCTGCAAGATACAATCTCTCCTCCCTCGACAGAACAGGACCCGGAGCAGCAAAGCAGAAATCGGATTACTGGTCCTGCGGATGCTGTTAATAGTCCACTTGACCTACCCTTGCCGCCACCACCACCACCACCTCCTCGACCTCAATGGGATCGGCACTCACGTCACGACAACTGGTCACAGATTGACATAAATAATCAGCGCCTAGGAATTGAGTGGGATATTATTGGTGACATGAGAATGGACATGGTCAGGCTACAGCAAAGGATGAATAATATGCAGAGAATGATGGAGACCTGTATGGATATGCAGCTTGAGTTGCAACGCTCAATAAAGCAAGAAGTTTCTGCTGCTCTAAATCGCTCATCTAGTTCATCAGGAATACATGACCATGATTCACAAAATGGTCAATCTAACTGGGAATGTGTTAGAAAAGGAGTTTGCTGTATGTGCTGTGAAAGCAAGATTGATTCTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCCAATGATTTGCTCAAAAGTAGAAGAAAATGTCCAATGTGTTATGCACCAGTAGTGGAAGTGATACGTGCTTATTCTATATAG 2460 0.4321 MTIAGVHSVAVIDSTFLRDSPSQSPGRRGDGERGSSQPSSILQIWREIEDERAGSQVQGGSGETLLQERSDELVPDQSQENMPDIRQREGHMIGDADLGENESEIYSQLQSQGESHDEQEELNNPSSENSHDLGEVERERVRQIFREWKISGDRDHASNIYRGNSGSRGEWLEEVEQERVSVTRDLVQTSGQQSAVSSGDNKEERSSVIGTQVESVRDGFVVNQNEGQPEHTRRGIRKLCGRQVLLDMLKKAEMERQREVQELLDHRAVSHFPHRNRIQALLRGRFLRNDRSVDNNRSFSIAESELGLLRKKQTVSGLREGFFSRKDNSGSSQVMCNLSDTSSVSDIDVNTIENTGASSLHMVRTIHSEQSDADNRGSDDRTGISGGQNCSLGIACENLDWQDSNANVEPRDWESSSSIGVTRGDSSEQNIDMMPTEGTANDPAQQSLQMEDTGHSNMQELTGVHAEQPDVIDIMDDESNLSNHNIHVEGNIVEWRNSTEESVDGNQLSSTSNEWPQNILGDGVNSRLPEAPEPEMWQEDGDFQEAVEIWLGAPSDHEIAQDGRIHGFYFPDDNNVYSVELRELLSRRSVSNLLHSSFRESLDQLIQSYVERQGHAHVQWELQDTISPPSTEQDPEQQSRNRITGPADAVNSPLDLPLPPPPPPPPRPQWDRHSRHDNWSQIDINNQRLGIEWDIIGDMRMDMVRLQQRMNNMQRMMETCMDMQLELQRSIKQEVSAALNRSSSSSGIHDHDSQNGQSNWECVRKGVCCMCCESKIDSLLYRCGHMCTCSKCANDLLKSRRKCPMCYAPVVEVIRAYSI 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0210 819 MobiDBLite consensus disorder prediction 114 136 - -
Lal25g0210 819 MobiDBLite consensus disorder prediction 626 681 - -
Lal25g0210 819 SUPERFAMILY RING/U-box 767 813 - -
Lal25g0210 819 MobiDBLite consensus disorder prediction 29 43 - -
Lal25g0210 819 MobiDBLite consensus disorder prediction 626 646 - -
Lal25g0210 819 MobiDBLite consensus disorder prediction 653 668 - -
Lal25g0210 819 CDD mRING-HC-C3HC5_NEU1 768 806 - -
Lal25g0210 819 Coils Coil 696 716 - -
Lal25g0210 819 MobiDBLite consensus disorder prediction 408 428 - -
Lal25g0210 819 Pfam Zinc finger, C3HC4 type (RING finger) 766 811 - -
Lal25g0210 819 MobiDBLite consensus disorder prediction 187 208 - -
Lal25g0210 819 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 744 818 IPR013083 -
Lal25g0210 819 PANTHER PROTEIN, PUTATIVE-RELATED 516 819 - -
Lal25g0210 819 PANTHER PROTEIN, PUTATIVE-RELATED 1 449 - -
Lal25g0210 819 MobiDBLite consensus disorder prediction 14 85 - -
Lal25g0210 819 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 449 - -
Lal25g0210 819 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 516 819 - -
Lal25g0210 819 MobiDBLite consensus disorder prediction 105 136 - -
Lal25g0210 819 ProSiteProfiles Zinc finger RING-type profile. 768 806 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0210 Lal-Chr25 1433362 1438666 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0210 - - lang:109350937 1457.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0210 25 1433362 1438666 Lal25g0210 25 1433362 1438666 ECH
Lal25g0210 25 1433362 1438666 Lal2g0320 2 1923549 1928728 PCT
Lal25g0210 25 1433362 1438666 Lal9g0301 9 1928264 1934123 PCT
Lal2g0320 2 1923549 1928728 Lal25g0210 25 1433362 1438666 PCT
Lal9g0301 9 1928264 1934123 Lal25g0210 25 1433362 1438666 PCT