Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0209 ATGGCGAAAGGTACGGATTCTGATGAGTTTTTATTGCTTTTTAGGGCTCGTGTTGGTCTCAAAAGGGAATTTCAATTTGCAATGAAGGCTCAATCAGAGATCTGTGGTGCTGTTTCTCTCGGTCGAACCCGGGCTAGTAAAACCAACCCGGACCAGGTTCCGGTTCAACTCTCTCCTTCTCCTAAACGGTCCAAGAAAATCGGTTCCTTTAAGGATTTTGAGGACCATGATGATGTGGTTAGCGAAGAAGATGCTAAGAGTGATGTATTGGATCTTACTAGCGATGATGAACCGAATAATCATGTTGGGGAATCCAAATTGGAGGCTGGAGATGCAATGTTAGAGGAATCGAAGAATGTTGTGATTGAAAGTGTGGAATTGCTGAAGAATGAGACTTTGAAGGAAGGGGTTGTGTGTGAAATTTCGCAGTCTGTGTTTGATAATGGGGTCAAAGAGGAAGAAATTGGTGTATACACTGATATGATGCTGATTTCAGTTAATGGCTATGGTGATAAGCCATTCACGCAATCGGTATTGAAGCAAAACTGTGACGAATCGAAGGTTATGAGTAATGAGGTGGTTGGAGTTGATGATAATGTTATAATGGAAACAACTCCATTGTTCATTTGTAAAAAGGAACTGAAGAGTGATATAGGGGGGAGTGAAATTATAGATGAAGAACAAATGAACGAAGTGGAGCATATGGTTTTGCAGGTGTTGGAGAAGGGAGTAATTGATACTCCAGAGGTTCATGCTGCTAATGGAACAACCCTGATTTTGGTTAATGGTTTATCTGATAAGGTGAAAGAAATGGCTGTGGAGAAGGCCGTAAGACGGTTCACGCGGTCTGCGTTGAAGCCATCATGTGATGAAACAAATGTCATAACTTATGGGGAAAATGTTATTGACAGAGCAGTTGAAATGGATGATAATGTTAGAAGGGAAGCAGAAAATGTCACAATAGTTACCACCCCAATTCTAACAAAGACACCTCGGAGCAGTGCCTTCAAGAAGTTCCCTAGCAAGCTAAAGGACCTTATAGCCACAGGGGTTCTTGAGGGTTTGTCAGTGAAGTATATCAGGGGTTCAAAGGCACGGAAACCTGGAGAAAAAGGGCTTGTAGGTATGATAAGTGGCTCTGGGATTTTGTGCCATTGTGAGACTTGTAAGGGCGTTGTTACACCCTCCGTGTTTGAGCTGCATGCTGGTAGTGCAAACAAACGTCCCCCAGAGTATATTTATCTTGATAATGGGAATACTCTCCGTGATGTCATGAATGCCTGTTTGGGTCCGTTGGATACCTTGGATGTAGCGGTTCAAAAGGTCCTTGGTGGCTTCACTATGAAGAAATCTACTATCTGTTTGAACTGTAGAGTGCGTATTTCTGAAGCTGGCAAGGGTTTGTCGAAACTACTATGTGATTCATGTTTGGAGTTGAAGGACTCTCAACGTATTTCCTTTCAAACACCTGCTAAAAGCAATACAAGTTTTTCAGTAGCTGTTCAAACACCTGCCGTAAGCAGTACAAGTGTTTTATTAGCTGTTCAAACACCTGCCATAAGCAATGCAAGTGTTCCAGTACCTGTTCAAACACCTGCCATGAGCCATGCAAGTGTTCCAGTAGCTGTTCTAACACCTGCACCTTCCATAAGCAATATAAGTGTTCTGGTAGCTGTTCAGTCCAGGCCACCAGAACCAGCTGTGGTTCCAAGGTCATTAAACAATGGGATGAAGCACACAACATCTTGTGGCAAGAGTCAGGGAAAGCTAACCAGAAAGGATCTAAGGTTGCATAAGTTGGTATTTGAAGAGAATGTATTGAAAGATGGAACAAAACTAAGCTATCATGCTCATGGAAAGCCAGTATTGCTTGGTTACAAACGAGGATGTGGAATTTATTGTACATGCTGCAGGAGAGAGATCAGTGCCTCTCAGTTTGAAGCACATGCTGGTTGGGCATCTCGACGCAAGCCTTACCTGCACATATACACACCTGAAGGAGTCTCACTTCATGACTTGTCCATCACTTTATTGAAAGAAAGGAGGTTTTCTATCAGTGAAAATGATGATCTCTGCAGCATATGCCAAGATGGAGGGGATCTATTGTGTTGTGATGGGTGCCCAAGAGCTTTTCATATAGATTGTGTTCCTCTACCATGCATTCCCAGTGGTACTTGGTATTGTAAGTATTGCCAGAATAATTTCCAAATGGACAAACATGGGGAGCGTAACGGGAATGCTGTGGACCGAAGATGCATTCGTGTTGTCAAAAGTGTAGAGGTTGATCATGGTGGATGTGCTTTGTGCAGGAGCTTTGGTCCCCGGACAGTGATTATTTGTGATCAGTGTGAAAAGGAATACCATGTTGGGTGTTTGAAGGATCATAACATGCAGAACCTAGAGGAATTGCCTGAAGGAAATTGGTTTTGTGGCACAAGTTGCAATCAGATCCATTCTACTCTAATGAATTTGGTGGTTGGTGAGAAGGATCTTCCAGTTCCAGATTCTCTTCTAAATTTGATTAAAAAGAAGCATGAAGAAAAAGGTAAAGAAACTGAGGGTGGTGGTCTTGATATTAAATGGAGGGTTTTGAATTGGAAGTTAGCTGCCTCTGATGAAACTAGGAAGTTGCTTTCGAAGGCAGTTGCCATCTTCCATGAACGGTTTGATCCTATAGTTGATTCTTCTTCTGGGCGTGATTTCATTCCAGCAATGCTTTATGGAAGGAACATCAAGGGTCAAGATTTTGGTGGAATGTACTGTGCAGTGCTCAGTGTCAACGAAGTGGTCGTTTCTGCTGGAGTATTTCGTATCTTTGGGCCAGATGTAGCAGAGCTTCCATTAGTAGCGACAATTGGAGAATGCCAAGGACAGGGCTACTTTCAGTGCCTGTTTAGTTGCATTGAGGGTTTACTTGGATCTTCAAATGCAAGGCAACTTGTCCTACCTGCTGCTGAGGAAGCTGAATCAATATGGACCAATAAATTTGGATTTACCAAGCTAAGCCAAGAAGAGATCAACAATCTTAGGAAATTTTATCAGATTATGGTATTTCAAGGGACCTCATTGCTACAGAAGCCTGTTCCTGCTGCACTTTGA 3099 0.4259 MAKGTDSDEFLLLFRARVGLKREFQFAMKAQSEICGAVSLGRTRASKTNPDQVPVQLSPSPKRSKKIGSFKDFEDHDDVVSEEDAKSDVLDLTSDDEPNNHVGESKLEAGDAMLEESKNVVIESVELLKNETLKEGVVCEISQSVFDNGVKEEEIGVYTDMMLISVNGYGDKPFTQSVLKQNCDESKVMSNEVVGVDDNVIMETTPLFICKKELKSDIGGSEIIDEEQMNEVEHMVLQVLEKGVIDTPEVHAANGTTLILVNGLSDKVKEMAVEKAVRRFTRSALKPSCDETNVITYGENVIDRAVEMDDNVRREAENVTIVTTPILTKTPRSSAFKKFPSKLKDLIATGVLEGLSVKYIRGSKARKPGEKGLVGMISGSGILCHCETCKGVVTPSVFELHAGSANKRPPEYIYLDNGNTLRDVMNACLGPLDTLDVAVQKVLGGFTMKKSTICLNCRVRISEAGKGLSKLLCDSCLELKDSQRISFQTPAKSNTSFSVAVQTPAVSSTSVLLAVQTPAISNASVPVPVQTPAMSHASVPVAVLTPAPSISNISVLVAVQSRPPEPAVVPRSLNNGMKHTTSCGKSQGKLTRKDLRLHKLVFEENVLKDGTKLSYHAHGKPVLLGYKRGCGIYCTCCRREISASQFEAHAGWASRRKPYLHIYTPEGVSLHDLSITLLKERRFSISENDDLCSICQDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNNFQMDKHGERNGNAVDRRCIRVVKSVEVDHGGCALCRSFGPRTVIICDQCEKEYHVGCLKDHNMQNLEELPEGNWFCGTSCNQIHSTLMNLVVGEKDLPVPDSLLNLIKKKHEEKGKETEGGGLDIKWRVLNWKLAASDETRKLLSKAVAIFHERFDPIVDSSSGRDFIPAMLYGRNIKGQDFGGMYCAVLSVNEVVVSAGVFRIFGPDVAELPLVATIGECQGQGYFQCLFSCIEGLLGSSNARQLVLPAAEEAESIWTNKFGFTKLSQEEINNLRKFYQIMVFQGTSLLQKPVPAAL 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0209 1032 SUPERFAMILY FYVE/PHD zinc finger 678 732 IPR011011 -
Lal25g0209 1032 MobiDBLite consensus disorder prediction 567 588 - -
Lal25g0209 1032 ProSitePatterns Zinc finger PHD-type signature. 692 731 IPR019786 -
Lal25g0209 1032 PANTHER AUTOIMMUNE REGULATOR 1 1027 - -
Lal25g0209 1032 PANTHER AUTOIMMUNE REGULATOR 1 1027 - -
Lal25g0209 1032 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 917 1003 IPR016181 -
Lal25g0209 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 685 750 IPR013083 -
Lal25g0209 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 760 817 IPR013083 -
Lal25g0209 1032 SUPERFAMILY FYVE/PHD zinc finger 758 811 IPR011011 -
Lal25g0209 1032 ProSiteProfiles Zinc finger PHD-type profile. 689 734 IPR019787 -
Lal25g0209 1032 MobiDBLite consensus disorder prediction 45 68 - -
Lal25g0209 1032 MobiDBLite consensus disorder prediction 45 63 - -
Lal25g0209 1032 MobiDBLite consensus disorder prediction 574 588 - -
Lal25g0209 1032 SMART PHD_3 765 815 IPR001965 -
Lal25g0209 1032 SMART PHD_3 691 732 IPR001965 -
Lal25g0209 1032 Pfam PHD-finger 692 733 IPR019787 -
Lal25g0209 1032 Pfam Tify domain binding domain 625 673 IPR032308 -
Lal25g0209 1032 Pfam Tify domain binding domain 375 428 IPR032308 -
Lal25g0209 1032 CDD PHD1_AIRE 691 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0209 Lal-Chr25 1422225 1429014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0209 332 1028 PHD Transcription Factor Family AT2G36720 44.005 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal25g0209 TDBD 6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0209 - - lang:109350941 1784.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0209 25 1422225 1429014 Lal25g0209 25 1422225 1429014 ECH
Lal25g0209 25 1422225 1429014 Lal10g1215 10 18524139 18530477 LSH
Lal25g0209 25 1422225 1429014 Lal2g0319 2 1899173 1908504 PCT
Lal2g0319 2 1899173 1908504 Lal25g0209 25 1422225 1429014 PCT