Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0208 ATGGATAGAAGCATTGGCAAAGAGGAGAAACTTGTGGGTTTGTGTCATAATAACAAAGATATCAACCATGTTGCTAAGGGTAAATGCCCCATGAAGCAAAGGCCTTTGTCCCCTTGTGTTGTTGCTGCCACCACCATGACTTCTAGATGCTCATTTTCTTCCCCCACAACCCCTTTTGAAAGTGTAGGTAAAGAAGAGGAAGACATGGCTAATTGCTTGATCTTATTGGCCCAAGGAAAAAGAGAAGGGAATGAAGAAGGTGGTAGTGGTAGTAACAAAAATATCACATGGACCACAACTTTAGCCGCAACTACAAATATTACGACTACAACTGCGGCCACAATTGAAATTGCAAGAAAGAATGGTTCTTATAACTATGAGTGCAAAACATGCAACAAAATATTCTCATCATTTCAGGCACTCGGTGGCCACAGGGCTAGCCACAAGAAGCTCGAGATGAATCTAGAGGAAAAGAAATCATTATTACCATCATCATTGTCGTTATTCTCACCGATAAGTTTTGAGTTTGAAGAATCAAAGCAAATCGATTTCAAAAATAATTCTCAAATTCCAATATCTCTTCACCAATTGGGTTGTGGTAAGAATAATTTTTTCCATGGAAACAAATCCAAAATTCATGAATGTTACATTTGTGGGGCAAAATTCACTTCTGGACAAGCCTTAGGTGGTCACATGAGGAAGCATAGGACATCTAAAAATCCTAGTACTCATGTAGTGAACAATAGTGGTAGTGACACAAGTTTTGAAGCTTATGCCACCAACAACACCTTAGAAATTAAGCCATGCAATGTTCTTAAAATTGATCTTAACCTTCCAGCACTAGAGGAGGATTGGATGAAGGGGTGA 867 0.391 MDRSIGKEEKLVGLCHNNKDINHVAKGKCPMKQRPLSPCVVAATTMTSRCSFSSPTTPFESVGKEEEDMANCLILLAQGKREGNEEGGSGSNKNITWTTTLAATTNITTTTAATIEIARKNGSYNYECKTCNKIFSSFQALGGHRASHKKLEMNLEEKKSLLPSSLSLFSPISFEFEESKQIDFKNNSQIPISLHQLGCGKNNFFHGNKSKIHECYICGAKFTSGQALGGHMRKHRTSKNPSTHVVNNSGSDTSFEAYATNNTLEIKPCNVLKIDLNLPALEEDWMKG 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0208 288 PANTHER ZINC FINGER PROTEIN ZAT5 7 286 - -
Lal25g0208 288 ProSitePatterns Zinc finger C2H2 type domain signature. 215 235 IPR013087 -
Lal25g0208 288 SUPERFAMILY beta-beta-alpha zinc fingers 126 235 IPR036236 -
Lal25g0208 288 Pfam C2H2-type zinc finger 213 237 - -
Lal25g0208 288 Pfam C2H2-type zinc finger 126 150 - -
Lal25g0208 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 126 153 IPR013087 -
Lal25g0208 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 240 IPR013087 -
Lal25g0208 288 Gene3D Classic Zinc Finger 103 238 - -
Lal25g0208 288 ProSitePatterns Zinc finger C2H2 type domain signature. 128 148 IPR013087 -
Lal25g0208 288 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 7 286 - -
Lal25g0208 288 SMART c2h2final6 126 148 IPR013087 -
Lal25g0208 288 SMART c2h2final6 213 235 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0208 Lal-Chr25 1417109 1417975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0208 51 285 C2H2 Transcription Factor Family AT2G28200 38.525 1.48e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal25g0208 zf-C2H2_6 7.5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0208 - - lang:109351032 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0208 25 1417109 1417975 Lal10g1218 10 18542256 18543194 LSH
Lal25g0208 25 1417109 1417975 Lal1g0404 1 2487392 2488330 PCT
Lal25g0208 25 1417109 1417975 Lal2g0316 2 1887267 1888184 PCT
Lal25g0208 25 1417109 1417975 Lal9g0297 9 1909193 1910110 PCT
Lal1g0404 1 2487392 2488330 Lal25g0208 25 1417109 1417975 PCT
Lal2g0316 2 1887267 1888184 Lal25g0208 25 1417109 1417975 PCT
Lal9g0297 9 1909193 1910110 Lal25g0208 25 1417109 1417975 PCT