Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0205 ATGGATGCAATGAATTTTCACCAAGACAATCTTATGCACTTCAATGACTTTGATCTACATGAATTCATTGATGATCCAAACTCTTATCAATTTATCAATTCTATTCAAGTGGAAAATGATGATCCTATTAGCAACTTTGATTCTAATGAACTTATCAATGATTGCTTCTTTGATAATAACCAATTTCAACCATATCCTCTAGAAAAACCAATGTTTGAAGATCATACCAATAATAATGTTGTCAATGTCTATGATCCAAGCTCCTCTACATTGAACTCCTTCTCTTGTTTTTATGATGATAATATTAAGGGAGATGGAGAAGAAGCAAATGATGGAGTGGATTCTTCAGCAACTGGGACTACTATTGATCCTGAATCGATGCTAAAAACCGATAGATCGAAGACTCTCATTTCTGAGAGGAGAAGGAGGGGTCGGATGAAAGACAAGCTTTATGCATTACGTGCTTTGGTTCCTAACATAACTAAGATGGATAAGGCTTCTATCATTGGAGATGCAGTGCAATATGTAAATGATCTTCAAGCACAAGCTAAGAAACTGAAGGTTGAGGTTACAGGACTTGAAACATCATTATTAGTGTCTGAAAATTATCAAGGATCAATTAAAAAGCCTTTAAAGTTTCATGCCCCCCACAACATGCATCCCATTAGCAAGAAGATCATGCAGATTGACATGTTGCAAGTGGAAGAAAAAGGATATTACACAAAAATAGTGAGCAATAAAGGAGAAGGAGTGGCTGCTTCATTGTACAAGGCTCTTGAGTCTCTTTCAGGTTTCAATGTTCAGAATTCAAACTTGTCTGCAGTTTGTGACACTTTTATACTTACATTTACATTGAATGTAAAAGGTTCAAACTCAGAAATTAACCTTCCAAATTTGAAATTATGGGTGACTGGGGCTCTTCTGAACCAAGGCTTTGAACTCATGCCATTTTTCCATGCTTGA 963 0.3583 MDAMNFHQDNLMHFNDFDLHEFIDDPNSYQFINSIQVENDDPISNFDSNELINDCFFDNNQFQPYPLEKPMFEDHTNNNVVNVYDPSSSTLNSFSCFYDDNIKGDGEEANDGVDSSATGTTIDPESMLKTDRSKTLISERRRRGRMKDKLYALRALVPNITKMDKASIIGDAVQYVNDLQAQAKKLKVEVTGLETSLLVSENYQGSIKKPLKFHAPHNMHPISKKIMQIDMLQVEEKGYYTKIVSNKGEGVAASLYKALESLSGFNVQNSNLSAVCDTFILTFTLNVKGSNSEINLPNLKLWVTGALLNQGFELMPFFHA 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0205 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Lal25g0205 320 Coils Coil 176 196 - -
Lal25g0205 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 15 316 - -
Lal25g0205 320 Pfam Helix-loop-helix DNA-binding domain 137 180 IPR011598 GO:0046983
Lal25g0205 320 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 15 316 - -
Lal25g0205 320 Gene3D - 125 196 IPR036638 GO:0046983
Lal25g0205 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 198 IPR036638 GO:0046983
Lal25g0205 320 SMART finulus 136 185 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0205 Lal-Chr25 1398236 1401337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0205 11 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 53.355 7.75e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal25g0205 HLH 3.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0205 - - gmx:100805451 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0205 25 1398236 1401337 Lal25g0205 25 1398236 1401337 ECH
Lal25g0205 25 1398236 1401337 Lal10g1219 10 18551461 18554262 LSH
Lal25g0205 25 1398236 1401337 Lal8g0164 8 1118169 1120736 LSH