Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0192 ATGAGCAACTCAAGGCATGAATCTCATGTTGCACAACAAATTCGGCGCGATAAGTTGAGAATCCATAATAGCTTCCATCATCTACAAGAATTTCCAGACAATAATCCAGAACAATTGTTGTTACACCAAGGGCTCAACTTAGATATTCAAGTTAGGAATGTTAGAAATGCCAACATGCTTGTTGATGAACCTGCACCTGTTTATTCTTCAGAAATGCCCAAAATTTCAAACCCTTTACCTCCTCCAAGGAACCATAATACTTTGGGGTATGAGGAACTAGGAGCAACTGAACCTATTAAGCTAATGATGCATCAGAATGGTTTAGTTCCCCATTCATATAACAGTTTGGGCAATGAAAGCACTTTTTTGGCTTCTGAACTCAACAATAATGTGTTTGCTTACCAGCACTATGGAAAGCAAAGTTACAATGAACTCACAGATACACAGTCTTCTCTTAGTAGAGAAATTCAGAAGCAATTAGGTGTAAATGTAATGCACCATTCTTCTTCTTCATCGTATCAGAATGCTTTGCAAGACATTGTAAAGTCATCGGCTTCTATTGTCGACTGCAATGGTTCACACATGGCTTCACTGATACAGCAAACTAGTCAAAACATTTGGGGAGGGGATCCAAATAATGAACTTGAACAACTTCAGACAAGTTATGCAAATCAACCAAATCACGGGCCGCGTTTCGGTAGTGTTAATTTTTGGACTAATAGGCCTCTCCCGAGTGATTCAACTCCTCAGAGTTTGTCCTTGTCACTTTCATCAAATTCACAATCCAAACCTTCTGTTTCTCATTTTGAAGAGGGTTCTGCATCTGCATGTGTATCAGATCATTGTATTTCTAAGCACCCTCCTCAATATGTAAAGCCATCTATCATTTCTAGAGATTCTGGGAAATCACCACTTCAAGACTATGTAGGGGTACCTAATCCAAACACGACAAGTTATCGAAATGTAGGTCCTCTTGGTCCTTTCACTGGCTATGCTACTATTCTCAAAAGTTCAAGATTCTTAAACTCTGCTCAGCAGTTGTTAGAAGAATTCTACTGTGTTTCTGGTCCAAGATTTGCAAATGTATTTGATGTTCCAAAGAGGGTCTCTGGAGAAGTTAATGCATATCCTTCTCCTTCTGCTGATACTGTTACTGTCAATGAAACTGGAGGGGTTGCTCCAAAAGGTGGTAACTCATGTTCTTCATCTTCTATGTTCTATAGTGCAAATGAAAATAGCACTAATAGGGAATCCATGAGTAGCTTTGTTCTTTCTCAAAAGCCGGATTATCAACAGAAGAAGGCAAAGTTACTTTACATGCAAGAAAAGGTTAGCAAGAGATACAAGCAATACCACCAACAAATGCAAATGATTGTTTCATCCTTCGAGTCAGTAGCGGGTCTTAGTTCAGCAACTCCTTACGTTTCCTTGGCTCTCAAGTCAACATCAAGACACTTCAGGTGCCTTAAAAATTCAATCTCAGATCAGCTCAAGCTTATAAGTGAAGTCTCGGGAGAGGACATACCAACTACCAGTACAAGTAGTAAAGTCGAGACTAATATGGCAAATCCAAGTTGCATGGACCAAAGCTTTCAAAAGAACAAAGTTAGTAGAAGTAACATGGGCCTTCATGAACCCCAACAGCATGTGTGGAGGCCTCAAAGAGGCTTGCCGGAACCTGCAGTGGCAATCCTTAAAGCTTGGTTGTTCGAGCATTTTCTTCATCCTTACCCCACAGACAATGATAAGCACATGTTGGCTACTCAAACGGGTCTATCGCGAAACCAGGTATCAAATTGGTTCATAAATGCTCGTGTCCGTCTATGGAAGCCAATGGTCGAGGAAATACACATGCTTGAAACCAAAGTCACAAAAGGTGACAACACTAGTAAAAATGAAGGAACTTCATGCACTGAAGGTGGTAGAATAGATAAGCCTCTAAGTAAGTTTGGTATGCATTCAATCCCTGAAAGCGAATTTCAGTGCAATAATGCTGAGGAAAATGGAATAAATGATGAAGAACAATGGAGTCAAGAGAAAAGGTCTAAGTTGGAATTCCAAATGATGGGTTTTGTTCCATACCAACGTGGAGGAGCACTTGGATCAGTGTCATTAACATTGGGTCTTAGGCATGGTGTTGAAGGTATACAAAACCAACAACAGTTACAACAGGATCAGCTTATACCTCACTTTGGAGGGCATTTATATCATCATTAA 2217 0.4001 MSNSRHESHVAQQIRRDKLRIHNSFHHLQEFPDNNPEQLLLHQGLNLDIQVRNVRNANMLVDEPAPVYSSEMPKISNPLPPPRNHNTLGYEELGATEPIKLMMHQNGLVPHSYNSLGNESTFLASELNNNVFAYQHYGKQSYNELTDTQSSLSREIQKQLGVNVMHHSSSSSYQNALQDIVKSSASIVDCNGSHMASLIQQTSQNIWGGDPNNELEQLQTSYANQPNHGPRFGSVNFWTNRPLPSDSTPQSLSLSLSSNSQSKPSVSHFEEGSASACVSDHCISKHPPQYVKPSIISRDSGKSPLQDYVGVPNPNTTSYRNVGPLGPFTGYATILKSSRFLNSAQQLLEEFYCVSGPRFANVFDVPKRVSGEVNAYPSPSADTVTVNETGGVAPKGGNSCSSSSMFYSANENSTNRESMSSFVLSQKPDYQQKKAKLLYMQEKVSKRYKQYHQQMQMIVSSFESVAGLSSATPYVSLALKSTSRHFRCLKNSISDQLKLISEVSGEDIPTTSTSSKVETNMANPSCMDQSFQKNKVSRSNMGLHEPQQHVWRPQRGLPEPAVAILKAWLFEHFLHPYPTDNDKHMLATQTGLSRNQVSNWFINARVRLWKPMVEEIHMLETKVTKGDNTSKNEGTSCTEGGRIDKPLSKFGMHSIPESEFQCNNAEENGINDEEQWSQEKRSKLEFQMMGFVPYQRGGALGSVSLTLGLRHGVEGIQNQQQLQQDQLIPHFGGHLYHH 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0192 738 SMART prehox3 329 495 IPR006563 -
Lal25g0192 738 SUPERFAMILY Homeodomain-like 553 617 IPR009057 -
Lal25g0192 738 SMART HOX_1 551 615 IPR001356 GO:0003677
Lal25g0192 738 Gene3D - 554 616 - -
Lal25g0192 738 MobiDBLite consensus disorder prediction 233 267 - -
Lal25g0192 738 Pfam Associated with HOX 334 494 IPR006563 -
Lal25g0192 738 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 34 713 - -
Lal25g0192 738 CDD homeodomain 551 612 IPR001356 GO:0003677
Lal25g0192 738 Pfam Homeobox KN domain 568 607 IPR008422 GO:0003677|GO:0006355
Lal25g0192 738 ProSiteProfiles 'Homeobox' domain profile. 548 611 IPR001356 GO:0003677
Lal25g0192 738 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 34 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0192 Lal-Chr25 1291563 1295496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0192 425 635 Homeobox Transcription Factor Family AT4G34610 51.659 3.83e-63 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lal25g0192 POX 8.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0192 - - adu:107461750 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0192 25 1291563 1295496 Lal25g0192 25 1291563 1295496 ECH
Lal25g0192 25 1291563 1295496 Lal10g1226 10 18599503 18605023 LSH
Lal25g0192 25 1291563 1295496 Lal2g0302 2 1777878 1782884 PCT
Lal2g0302 2 1777878 1782884 Lal25g0192 25 1291563 1295496 PCT