Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0188 ATGGGTTTTGCTTGTTCAAGATCTGTAAGTTTTGAAGATGATCCTGAACTAGTAGGTGTTACTGCATCGAAAAACGACAACGGAGTTAAGCTTAAATACCACATTGATGGTACACAAATAGCAGAGTCAAGTTCCAAAATGGCACAGAAGAAGGTGCTAAGGAAGAAAGGAAAGTTGTTGAAAGCTAGAGTATTGTCAAGGGTTTTCTCAGAGGACTATGAAAGAGTAAACAGAAGACTAATATTAGATCCTAGGGGACAAATAATAAACAAATGGAACAAGATTTTCTTGGTAGCATGTTTAGCATCTTTGTTTTTGGACCCTTTGTTCTTTTATTTGCCTGTAGTTCAAGATCAAGTTTGCATTGATATTGGAATAAGTCTTGAAGTTACCCTCACAATCATAAGATCAGTGGTGGATTTGTTTTACATCATCCAAATTTTCATCAAGTTTCGTACAGCTTATGTTGCGCCTTCTTCGCGGGTATTCGGGAGAGGAGAACTTGTTATAAAATCTTATAAGATTGCAATTAGGTACCTAAAGATGGGTTTCTGGTTAGACTTCATTGCTGCACTGCCAATTCCTCAGGTGTTAATTTGGATTGTTATTCCAACACTTAGAGGTTCAACCATGAGAAACACAAAAAATGTCCTTAGATTTTTCATCATATTCCAATATCTGCCAAGGCTATTTTTGATTTTTCCACTTTCAGCACAAATTGTTAATGCTACAGGTGTTGTGACAAAAACAGCATGGGCAGGGGCTGCTTATAATCTCATGCTTTACTTGTTGGCAAGCCATATTTTAGGGGCATGTTGGTACCTTCTATCAATTGAACGTCAAGAAGCATGCTGGAGAAGAGTTTGCCTTATGGAGAAGTTCTCTTGTGAATATGGATTCTTTGACTGCCACAGGGTTAAAGATGGCCATAGAGTCTCTTGGTTTAAGACAAGTAATATCACAAGTTTATGTTCACCAGATGTTGATTTCTATCAGTTTGGTATATATGCTGATGCTGTGACTTCTCAAGTTACATCTTCAGCTTTCTTAAATAAGTACTTCTATTGTCTCTGGTGGGGCTTAAGGAATCTAAGTTCTTTGGGACAAAACCTTCTCACCAGCACTTATGTTGGAGAAATAATGGTTGCCATTCTTGTTGCAACCCTTGGATTGGTTCTCTTTGCCTTGCTCATTGGTAATATGCAGACATACCTCCAATCAACAACGGTCCGGTTAGAAGAATGGAGGGTGAAAAGTACTGATGCAGAGCAATGGATGCATCACAGGCAACTACCTTCAGAACTAAGAGAGTCGGTGCGTAAATATGATCAATACAAATGGCTGGCTACAAGAGGAGTTGATGAAGAAGCTCTTCTCAAAGGACTTCCGGTCGATCTTCGCAGAGATATCAAGCGCCACCTTTGTCTTGAACTAGTTAGAGGAGTCCCATTGTTTGATCAAATGGATGAGAGAATGCTAGATGCAATATGTGAAAGGCTAAAGCCTGCATTGTCCACTGAAGGCACCTATCTTGTTCGCGAGGGTGATCCTGTGAACGAGATGCTCTTCATAATTCGCGGCCATCTTGATTCTTACACAACAAATGGAGGCCGTGCTGGATTCTTCAACTCGTGCCGAATCGGCCCAGGTGATTTCTGTGGTGAGGAACTATTAACATGGGCATTAGACCCAAGACCAAGTGTGATACTCCCTTCTTCCACTAGAACAGTTAAAGCCATCTCAGAAGTAGAGGCATTTGCACTCATAGCAGAGGATCTAAAGTTTGTTGCATCTCAATATAGAAGGCTGCATAGTAAACAACTTAGGAATAGGTTCAGGTTTTACTCACACCATTGGAGAACATGGGCTGCATGTTTCGTTCAAGCCGCGTGGAGACGACACAAGAAAAAGAAGGATGCTGCTGAATTGAGGATCAAGGCAAATGCAAAAAATGTTGAGCTTGAAAAACCAACATCATCAGGATCAGGCTTAGTTGTGTATGCAACAAGAGTGGCCAGGAGCACTACAAAAGGTGTCAATGAAGTGGTCAATTCTTTGCAGAAGCCAGCAGAACCAGATTTTTCTGTTGATGAATGGATAAATTCTTAG 2109 0.4049 MGFACSRSVSFEDDPELVGVTASKNDNGVKLKYHIDGTQIAESSSKMAQKKVLRKKGKLLKARVLSRVFSEDYERVNRRLILDPRGQIINKWNKIFLVACLASLFLDPLFFYLPVVQDQVCIDIGISLEVTLTIIRSVVDLFYIIQIFIKFRTAYVAPSSRVFGRGELVIKSYKIAIRYLKMGFWLDFIAALPIPQVLIWIVIPTLRGSTMRNTKNVLRFFIIFQYLPRLFLIFPLSAQIVNATGVVTKTAWAGAAYNLMLYLLASHILGACWYLLSIERQEACWRRVCLMEKFSCEYGFFDCHRVKDGHRVSWFKTSNITSLCSPDVDFYQFGIYADAVTSQVTSSAFLNKYFYCLWWGLRNLSSLGQNLLTSTYVGEIMVAILVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKSTDAEQWMHHRQLPSELRESVRKYDQYKWLATRGVDEEALLKGLPVDLRRDIKRHLCLELVRGVPLFDQMDERMLDAICERLKPALSTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQYRRLHSKQLRNRFRFYSHHWRTWAACFVQAAWRRHKKKKDAAELRIKANAKNVELEKPTSSGSGLVVYATRVARSTTKGVNEVVNSLQKPAEPDFSVDEWINS 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0188 702 CDD CAP_ED 484 603 IPR000595 -
Lal25g0188 702 SUPERFAMILY cAMP-binding domain-like 414 611 IPR018490 -
Lal25g0188 702 ProSiteProfiles cAMP/cGMP binding motif profile. 484 581 IPR000595 -
Lal25g0188 702 Pfam Ion transport protein 92 411 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal25g0188 702 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 45 696 - -
Lal25g0188 702 PRINTS EAG/ELK/ERG potassium channel family signature 136 146 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal25g0188 702 PRINTS EAG/ELK/ERG potassium channel family signature 147 156 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal25g0188 702 PRINTS EAG/ELK/ERG potassium channel family signature 264 274 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal25g0188 702 PRINTS EAG/ELK/ERG potassium channel family signature 353 370 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal25g0188 702 PRINTS EAG/ELK/ERG potassium channel family signature 397 406 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal25g0188 702 PRINTS EAG/ELK/ERG potassium channel family signature 447 454 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal25g0188 702 Gene3D Jelly Rolls 482 602 IPR014710 -
Lal25g0188 702 SUPERFAMILY Voltage-gated potassium channels 84 406 - -
Lal25g0188 702 Gene3D - 96 408 - -
Lal25g0188 702 PANTHER PROTEIN CNGC15A 45 696 - -
Lal25g0188 702 SMART cnmp_10 484 615 IPR000595 -
Lal25g0188 702 Gene3D Helix hairpin bin 412 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0188 Lal-Chr25 1249354 1254633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0188 56 697 Ion Channels AT2G28260 74.455 0.0 999
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0188 K05391 - gmx:100811847 1154.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0188 25 1249354 1254633 Lal25g0188 25 1249354 1254633 ECH