Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0185 ATGGCAATGACTGTGACTCAACACAGAGAAAGTAACAGTGGTGGTGGTAGCAGCATTGATAAACACCTTGATTCTGGTAAGTATGTGCGCTACACGGCTGAACAAGTTGAAGCTCTTGAAAGGGTTTACTTAGAGTGCCCCAAACCCAGTTCCTTGAGAAGGCAACAGTTAATCAGAGAGTGCCCAATTCTCTCCAACATTGAACCAAAGCAAATCAAAGTTTGGTTCCAGAACCGTAGGTGTCGGGAGAAGCAGAGAAAAGAGGCTTCACGGCTTCATGCCGTGAATCGGAAACTAACTGCAATGAACAAGTTGTTGATGGAGGAAAACGGCCGGTTGCAGAAACGGGTGTCGCAGTTGGTATGCGAGAATGACTATATGCGGCAGCAATTGCATATTCCATCAAAACGAGCTGCTAATGCAAGTTGTGATTCGGCGGTTACTACTCCCCAGCATTATATGAGAGATGCTAGCAATCCTGCTGGATTTCTATCAATTGCAGAGGAGACTTTGACAGAGTTCCTTTCAAAGGCTACGGGAACAGCTGTTGACTGGGTCCAGATGCCCGGAATGAAGCCTGGTCCGGAGTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCGCTGGTGTGGCAGCTCGAGCTTGTGGTCTGGTTAGTTTAGAACCTACAAAGGTTGCGGAGATCCTAAAAGACCGCCTGTCTTGGTTTCGAGAGTGTCGGAGTCTAGAAGTTTTCACAACGGTCCCTGCTGGAAATGGAGGGACAATTGAACTTGTTTACACACAGATATATGCCCCAACCACACTGGCTCCTGCCCGGGATTTCTGGACACTAAGATACACAACAACTTTAGACAATGGCAGTCTTGTGGTTTGTGAGAGGTCACTGTCCGGTTCTGGTGCTGGGCCTAATGCAGCAGCTGCCGCTCAATTTGTGAGGGCTGAAGTGCTATCTAGTGGCTACTTGATTCGACCATGTGAAGGTGGAGGATCAATCATCCACATTGTAGACCACCTAAACCTTCAGCCTTGGAGTGTGCCAGAAGTACTGCAACCGCTTTATGAATCATCAAAAGTGGTAGCTCAGAAAATGACAATTGCGGCACTTCGCTATATCAGGCAAATAGCCCAGGAAACAAGTGGTGAAGTGGTATATGGCTTGGGTAGGCAACCGGCTGTTCTGAGAACTTTCAGCCAAAGGTTGAGCAGAGGATTCAACCATGCTGTCAATGGATTCAATGACGATGGCTGGTCTGTATTGAACTGTAATGATGCTGAGGATAACGTCCCTCCAGCAGCTTTGATTCGCTTTCTGAGGGAGCATCGCTCAGAGTGGGCTGATTTTAACGTTGATGCCTATTCTGCTGCTTCACTTAAAGCTGGCTCCTATACATACCCTGGAATGAGGCCTACAAGTTTCACCGGCAATCAAATAATCATGCCACTTGGGCACACAATTGAACATGAAGAGATGCTTGAAGTTGTCCGGCTTGAAGGTCACACTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGACATTCATCTCTTACAGATATGCAGTGGAATTGATGAGAATTCTGTGGGGGCTTGTTCTGAGCTAATATTTGCTCCAATTGATGAAATGTTTCCAGATGATGCTCCATTGGTGCCTTCCGGTTTCCGCATTATTCCCTTGGATTCAAAACCAGGTTATCAAAAGGGTGCGACGGCAGGAAATCGAACCTTGGATTTGACATCTGGTCTTGAAGAAGGCCCGGCAACAAGCCATGCTGAAGGAGATGCATCATCATGTTATAACAATCGATCCGTGTTGACTATAGCCTTTCAGTTTCCTTTTGACAGCAGTCTGCAGGACAATGTTGCAATCATGGCACTTCAGTACGTCCGCAGTGTGATTTCTTCTGTGCAGAGGATTGCCATGGCTATATCTCCATCTGGTATAGACCCGGCTGTCAGTGCAAAACTCTCCCCGGGCTCTCCGGAAGCTCTTATGCTAGCTCAGTGGATCTAG 2010 0.4716 MAMTVTQHRESNSGGGSSIDKHLDSGKYVRYTAEQVEALERVYLECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLHAVNRKLTAMNKLLMEENGRLQKRVSQLVCENDYMRQQLHIPSKRAANASCDSAVTTPQHYMRDASNPAGFLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPESVGIFAISQSCAGVAARACGLVSLEPTKVAEILKDRLSWFRECRSLEVFTTVPAGNGGTIELVYTQIYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNAAAAAQFVRAEVLSSGYLIRPCEGGGSIIHIVDHLNLQPWSVPEVLQPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNHAVNGFNDDGWSVLNCNDAEDNVPPAALIRFLREHRSEWADFNVDAYSAASLKAGSYTYPGMRPTSFTGNQIIMPLGHTIEHEEMLEVVRLEGHTLAQEDAFVSRDIHLLQICSGIDENSVGACSELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPGYQKGATAGNRTLDLTSGLEEGPATSHAEGDASSCYNNRSVLTIAFQFPFDSSLQDNVAIMALQYVRSVISSVQRIAMAISPSGIDPAVSAKLSPGSPEALMLAQWI 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0185 669 SMART START_1 165 375 IPR002913 GO:0008289
Lal25g0185 669 SMART HOX_1 24 90 IPR001356 GO:0003677
Lal25g0185 669 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 427 IPR044830 GO:0003700
Lal25g0185 669 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 428 669 IPR044830 GO:0003700
Lal25g0185 669 ProSiteProfiles START domain profile. 156 384 IPR002913 GO:0008289
Lal25g0185 669 CDD bZIP 79 118 - -
Lal25g0185 669 SUPERFAMILY Homeodomain-like 26 90 IPR009057 -
Lal25g0185 669 CDD homeodomain 27 87 IPR001356 GO:0003677
Lal25g0185 669 Coils Coil 96 116 - -
Lal25g0185 669 Gene3D - 202 382 IPR023393 -
Lal25g0185 669 Pfam START domain 166 373 IPR002913 GO:0008289
Lal25g0185 669 MobiDBLite consensus disorder prediction 1 19 - -
Lal25g0185 669 Pfam Homeodomain 27 85 IPR001356 GO:0003677
Lal25g0185 669 ProSiteProfiles 'Homeobox' domain profile. 22 86 IPR001356 GO:0003677
Lal25g0185 669 Gene3D - 20 92 - -
Lal25g0185 669 MobiDBLite consensus disorder prediction 1 21 - -
Lal25g0185 669 CDD START_ArGLABRA2_like 160 376 - -
Lal25g0185 669 SUPERFAMILY Bet v1-like 165 377 - -
Lal25g0185 669 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 427 - -
Lal25g0185 669 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 428 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0185 Lal-Chr25 1211929 1222596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0185 1 669 Homeobox Transcription Factor Family AT5G60690 77.021 0.0 1108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal25g0185 START 1.1e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0185 K09338 - gmx:100804870 1146.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0185 25 1211929 1222596 Lal25g0185 25 1211929 1222596 ECH