Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0180 ATGAGTTCTTCTTGCAACAGAACAATTTCTCTTCCTCTTCACAAGTTTGATGATCCAATGGGGGCAACTGAAGAAACATCATATGGTAATAGACAGAAGAATATTGTGATGGAAGTACCCTTAAGAACAACATCACTAGAGTCTGGCCAGGATTTTGTTGGAATAAAGATGCCAATGACACCAAGTCCAAGTCCTGCTACCAAGAGAGTGAACTTTCTCGCGACTTCTCGTTCTGTTGATGCTCCAAATACTAATTCTGCTCCAGGGCCTTCCGTGCCGAGAGGCAAATCATCCATAAGAAGCATGTTACCAAAATTGACCTTCAGGCAAAGGACATCATCAGATATTGAAAAGGCTAATCTTACTACTGCAGCTCCAGATGGTTGCTTTTCAGGCTCTCATGAAAAATCTCCAATACCAAGATCAGTGTCCATGGCTAAGATGTTTACTCCTAAGATTAGAAGAACATCATCATTACCTGTAGAAGAATTTGGACATGAAAACACAGAATTTGCTTTTGGTGGATGTTTTGATGGCTCTCCATATATAAGAGAGAGCCAGGGGATGATACCTCGGTCTAATTCAGTGCCTGTCATTAGCAAAGAACAAGGCATAAGGAGAATGGATTCGTATTTTCGCATTATTTCCACCCCTCAAGTAAAGAAACGGAATGAATGGCTGACCAGTTCCACAACACAGGATAGTGAAAATGGTGAGGCTGATGGTGAAGATATAGGTGCAGAGGAAGCTGTGTGTAGAATATGTATGGTTGACCTATGTGAAGGAGGTGAGACGTTCAAGATGGAATGCAGCTGCAAAGGTGAACTTGCCTTAGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATCAAAGGTAACAAGACTTGTGATGTGTGTAAGGAAGAAGTTCAGAATCTATCTGTCACTCTCTTACGTGTCCAAAATGTTCAACCTCAGAATACTGGAGCAACGCCTCAGCTACTCTTAGAATATTATGACACACTCAATATTTTCCTCGGAGTACTGCAGTCATTACAAGTGTATTGTTTCTTGGCACAATTGAACAGGGTTTGGCAGGAACTGCCAGTGCTTGTCCTTGTCAGCATGCTTGCATATTTCTGTTTTCTCGAGGAACTATTGGTTGGTAAGCAAGCAATTCTGTCGATCCTTCTAGCAACATTTGCTGGGTTTGGTGTTGTGATGAGTGGAAGTTCAATTCTAACTGAGATTATTAAATGGAGAACAACATGGGAGGCTTTGCAGCAAAATGGTTCTCAAGTAATGACACATACATACCCTCAAACTATGAATGCTGCACCACAAACAGGCCCTTCCAACCGCACTCAAAGTATGGTTTAG 1359 0.4157 MSSSCNRTISLPLHKFDDPMGATEETSYGNRQKNIVMEVPLRTTSLESGQDFVGIKMPMTPSPSPATKRVNFLATSRSVDAPNTNSAPGPSVPRGKSSIRSMLPKLTFRQRTSSDIEKANLTTAAPDGCFSGSHEKSPIPRSVSMAKMFTPKIRRTSSLPVEEFGHENTEFAFGGCFDGSPYIRESQGMIPRSNSVPVISKEQGIRRMDSYFRIISTPQVKKRNEWLTSSTTQDSENGEADGEDIGAEEAVCRICMVDLCEGGETFKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVQNLSVTLLRVQNVQPQNTGATPQLLLEYYDTLNIFLGVLQSLQVYCFLAQLNRVWQELPVLVLVSMLAYFCFLEELLVGKQAILSILLATFAGFGVVMSGSSILTEIIKWRTTWEALQQNGSQVMTHTYPQTMNAAPQTGPSNRTQSMV 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0180 452 MobiDBLite consensus disorder prediction 77 101 - -
Lal25g0180 452 SMART ringv_2 251 300 IPR011016 GO:0008270
Lal25g0180 452 CDD RING_CH-C4HC3_MARCH 252 300 - -
Lal25g0180 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 309 IPR013083 -
Lal25g0180 452 MobiDBLite consensus disorder prediction 1 26 - -
Lal25g0180 452 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 384 431 - -
Lal25g0180 452 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 29 384 - -
Lal25g0180 452 PANTHER OS02G0165000 PROTEIN 384 431 - -
Lal25g0180 452 PANTHER OS02G0165000 PROTEIN 29 384 - -
Lal25g0180 452 ProSiteProfiles Zinc finger RING-CH-type profile. 244 306 IPR011016 GO:0008270
Lal25g0180 452 MobiDBLite consensus disorder prediction 77 92 - -
Lal25g0180 452 Pfam RING-variant domain 252 299 IPR011016 GO:0008270
Lal25g0180 452 SUPERFAMILY RING/U-box 248 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0180 Lal-Chr25 1162863 1167362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0180 249 306 C3H Transcription Factor Family AT2G37950 45.763 2.16e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0180 - - cam:101488558 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0180 25 1162863 1167362 Lal25g0180 25 1162863 1167362 ECH
Lal25g0180 25 1162863 1167362 Lal2g0287 2 1669510 1674627 PCT
Lal25g0180 25 1162863 1167362 Lal9g0266 9 1651625 1664386 PCT
Lal2g0287 2 1669510 1674627 Lal25g0180 25 1162863 1167362 PCT
Lal9g0266 9 1651625 1664386 Lal25g0180 25 1162863 1167362 PCT