Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0172 ATGTTTTGGTTCCATTTGAGTCTCAACAGAAGCAGCTTGGTGTTCATGGAAATTGATCTGAACCATGCAGTGACTGAGGTTGAAAAGAATGTAACTTGCAATGAGGGGTGTGAGAAAGGTGCTTGTGTTATTACTAGTTTATGCTCTTCAACATGTTCATCTTCAAGTTACTCTTCAGATTCTATTTCTTCTTCTTATGTTGAGCTTTGGAATGCTTGTGCTGGTCCTCTTACTTCTCTTCCAAGGAAAGGGAATGTGGTTGTGTATTTTCCACAAGGTCACATGGAACAAGTTGCATCTTTCTCTACCTTTTCAACAATGGAAATGCCAACCTATGATCTTCAACCACAGATCTTTTGTAGAGTTGTCAATGTCCAACTACTTGCCAATAAGGAGAATGATGAGGTTTATACTCAGGTTACTTTGCTTCCTCAAGCAGAGTTAGAAGGGATGTATTTGGAGGGCAAAGAGGTTGAGAAAGTTGGAACAGATGAAGAGGGAAATGTAACAACACATACAAAATCAACCCCTCACATGTTCTGCAAAACACTTACTGCCTCTGATACCAGCACTCATGGGGGGTTTTCTGTTCCTCGTAGAGCCGCCGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCTCAAGAACTTGTTGCAATAGACCTGCATGGTGTGGAGTGGAAATTTCGCCATATTTACAGAGGTCAGCCAAGGCGGCATCTGCTTACTACTGGCTGGAGCATTTTTGTCAGCCGAAAGAGTCTTGTTTCCGGGGATGCAGTGCTCTTTCTGAGGGGTGCAAGTGGAGATTTGAGGTTGGGGATCAGAAGAGCTTTTCGACTGAGAAATGGTCTTCCTGAATCACTTGTTGCTAACCAGAGTTGCTATCCCAATTTCCTTTCTTCTGTGGCTAATGCTATATCTGCTAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCAGATTTTGTTGTGCCATATCAAAAATATGTCAAAAGCATCAGAAATCCAGTGACTATTGGGACAAGATTTAAAATGAAATTTCATATGGATGAATCTCCAGAGAGAAGGTTTAGTGGTGTAGTGACTGGAATGAGTGATTTGGATCCATATAGGTGGCCTAAATCAAAATGGAGGTGTTTGATGATAAGAAGGGATGAAGATATTGAAGCAAATGAAAATCAAGTATCTCCTTGGGAGATTGATCCTTCTGCTTCTCTCCATCCTTTGAGCATTCAGTCTTCATCAAGGCTGAAGAAACTGTGGACAGGTCTGCAGGATGCCTCATACAGTCAGCTCGTCACCGGCATCAGTCCTAATGCTGAGAAAGCTAAAGTAGGAAGCAATGGGTTTCTGGATTTTGAAGAGTATATAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAAAACAGGTTTTATGTCACTACATTATGGATGTGACACAGTAACTAAGCAGCCAGGTTTGGAGACCAGTTCTCCAAGCCATATAATTGGTGCATCAACTGGAGTAAGAAAGAATACTGCTGCTGAGTTTATGAAGGTTCACCCTTCTAGTTATGCAGGCATCACAGAAGTCAATAGGTTTCCAAGGGTTTTGCAAGGTCAAGAAATAGGTCCACTGAGACCCCTCACAGGAAAGGTTGATTTGAACCTTGGTGCTTGGGGCAAACCGAATATCGGCTACACAACTTACAACCTGCATCAACCAACTTTTCATTCTTTAGGACCAGAAGTTCTTGAAACTGCATATTTTCCTTATGGTGATATGCACAAAGCTGGTCAAGGCAGCAGCATATTCTGGTGTAATCCCTCCAATTTCCAAAGAGATCATGTCCCATCTAACAATCCTTCCACTCAATCAGGGGTCATGAGAAATGAAGTTGGAGTGCCAGAACTCGCTATCGCGAATGAGCAGAAGCTGCAGGAAGATATTTCTGGTGCTGCTGTTACTTCTTTAGGAGCAAACATGAGGATTCAAAATGATGACAATTTCAAGGGGAAGGTAAATGGTTGTAAACTATTTGGATTTCTCTTGTGTGGGGAAACTACCACACAAAATTTACAGAACTCTGCTAAAAGAAGTTGCACCAAGGTTATATGCTTCAGCAGAGACAAAACTGCAAATACATTCTTGAAGGGAACTCCACACCAACATCAAAAAGTCTGTACTATTAGATCCGAATGGCTATCAGATCATAAACGAAAACTGGGGGAAGGGGACTAA 2241 0.4186 MFWFHLSLNRSSLVFMEIDLNHAVTEVEKNVTCNEGCEKGACVITSLCSSTCSSSSYSSDSISSSYVELWNACAGPLTSLPRKGNVVVYFPQGHMEQVASFSTFSTMEMPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELEGMYLEGKEVEKVGTDEEGNVTTHTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAIDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSRKSLVSGDAVLFLRGASGDLRLGIRRAFRLRNGLPESLVANQSCYPNFLSSVANAISAKSMFHVFYSPRASHADFVVPYQKYVKSIRNPVTIGTRFKMKFHMDESPERRFSGVVTGMSDLDPYRWPKSKWRCLMIRRDEDIEANENQVSPWEIDPSASLHPLSIQSSSRLKKLWTGLQDASYSQLVTGISPNAEKAKVGSNGFLDFEEYIRSPKVLQGQEKTGFMSLHYGCDTVTKQPGLETSSPSHIIGASTGVRKNTAAEFMKVHPSSYAGITEVNRFPRVLQGQEIGPLRPLTGKVDLNLGAWGKPNIGYTTYNLHQPTFHSLGPEVLETAYFPYGDMHKAGQGSSIFWCNPSNFQRDHVPSNNPSTQSGVMRNEVGVPELAIANEQKLQEDISGAAVTSLGANMRIQNDDNFKGKVNGCKLFGFLLCGETTTQNLQNSAKRSCTKVICFSRDKTANTFLKGTPHQHQKVCTIRSEWLSDHKRKLGEGD 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0172 746 PANTHER AUXIN RESPONSE FACTOR 24 704 - -
Lal25g0172 746 SUPERFAMILY DNA-binding pseudobarrel domain 169 293 IPR015300 -
Lal25g0172 746 Pfam B3 DNA binding domain 180 280 IPR003340 GO:0003677
Lal25g0172 746 SMART B3_2 180 282 IPR003340 GO:0003677
Lal25g0172 746 CDD B3_DNA 178 280 IPR003340 GO:0003677
Lal25g0172 746 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 704 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal25g0172 746 Pfam Auxin response factor 306 387 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal25g0172 746 Gene3D - 344 415 - -
Lal25g0172 746 ProSiteProfiles B3 DNA-binding domain profile. 180 282 IPR003340 GO:0003677
Lal25g0172 746 Gene3D - 178 282 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0172 Lal-Chr25 1101948 1109819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0172 61 704 B3 DNA Binding Superfamily AT5G60450 55.008 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal25g0172 B3 4e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0172 - - gmx:100812909 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0172 25 1101948 1109819 Lal25g0172 25 1101948 1109819 ECH
Lal25g0172 25 1101948 1109819 Lal1g0372 1 2238373 2248840 PCT
Lal25g0172 25 1101948 1109819 Lal2g0278 2 1629921 1635716 PCT
Lal1g0372 1 2238373 2248840 Lal25g0172 25 1101948 1109819 PCT
Lal2g0278 2 1629921 1635716 Lal25g0172 25 1101948 1109819 PCT