Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0171 ATGGATTTGGTATCCAGTTGCAAGGAAAAGTTGACATATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTAGGACTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTTGACAGGATATTATCTATTCTCTCTGATGAACAAGTTTCCAGAATGTGGGCTAAGAAAAATGCTGTTGGAACAGAGCAAGTGGCAAAATTAGTGGATGACACATACAGAAAATTGCAGGGATCCGGGGCCACTGATCTAGCATCAAAGGGACAAGGTGCCTCAGATAGTAGTAATGTGAATGTTAAAGCTGAAATGGATGACTCCTTTCAGTCAGATACAAAGATTCGTTGTCTCTGTGGAAGTTCATTGGAATCAGAGCCATTGATAAAGTGTGAAGATACAGGATGCCATGTGTGGCAGCATATTAACTGCGTTATTATTCCAGAGAAACCCATGGAAGTAACCCCTCCAGTTCCTGATAAATTTTATTGTGAGACCTGTCGACTCAGTCGTGCAGATCCGTTTTGGGTTACATTGGCACACCTGTTGTATCCTGTGAGTTTGACTACGACAAGCATTCCAACCGATGGAACAAACCCAGTTCAGAGCGTGGATAAAACATTTCAACTTACGAGAGCTAATAAGGACTTGATATCAAGACCAGAATTTGATGTTCAGGCTTGGTGTATGCTTTTGAACGACAAAGTTTCATTCAGAATGCAATGGCCACAATATACAGACCTACAAGTCAATGGTTTTCCTGTACGTGCAATTAACAGACCTGGTTCACAGTTGCTTGGGGCTAATGGCCGTGATGATGGTCCAATTATCACGCCATATACAAAAGACGGAGTTAATAAGATTTCCTTAACAGGGTGTGATGCTCGCATTTTCTGTTTAGGGGTCCGTATTGTAAGAAGGCGAAGCATGCTGCAGATCTTAAACATGATTCCAAAGGAGTCTGAAGGTGAGCGTTTCGAAGATGCTCTTGCACGGGTGGTTTCTTGTGTTGGGGGTGGAAATGCAAGTGATAATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCAGCATCAACCTTCGTTGTCCAATGAGTGGATCAAGAATGAAGATTGCTGGAAGATTCAAACCTTGCATTCACATGGGTTGTTTTGATCTTGAAATTTTTGTGGAAATGAATCAACGTTCAAGGAAGTGGCAATGCCCCATATGTCTTAAGAATTATGCATTGGAGAATATTATTATTGACCCTTATTTCAATCGCATCACTAAAATGATGAGGAATTGTGGAGAAGAAGTTAATGAGGTTGAGGTGAAGCCTGATGGTTCTTGGCGTGTCAAGGCTAAGGGTGAAATTGAACGCATGGAGTTAGGGAATCTTGCTCAATGGCACTGTCCTGATGGATCCCTTTCTGTTTCTACTGGTGGAGAAGTCAAGAGTGTAGAAACATCAAATCTCAAACAGGGTGGGGTTTCAGACAGTCCTGCTGGTTTAAGACTTGGCATCAGGAAGAATTGTAATGGAGTTTGGGAAGTCAATAAACCTGACGGCACAAACACCTCTTCTGGTAATAGATTGATTGAGGGTTTTGGAAATCACGAACATGTGGTTATTCCAATGAGTAGCAGTTCCACTGGAAGTGGCAGGGGTGGTGATGATCGTAGCGTAAATCAAGGTGGTGCTGGGCATATTGATTATTCAACTGCCAATGGGATTGAGATGGATTCTCTGTATCACAATATTGTTGATTCAGCTCATGGAGATGCTGCACATAACACTTCGGCTCCAGTGGGTGCTGCAGAAGTTATTGTTCTGAGTGACTCAGATGAAGACAATGATATATTGGCCTCTCCTACACTTGGGTACGAAAATAATCAAACTGGTGCTGCAAGAGTTGTTTACTCTGTGCCATCACATGAAGTTATTGATTTATATGCAGAAGATCAGCAGCTTGGTGGAAATCCATGCTCAGGACTTTATAATAATCCCGATGAAGATGATTTTGGGTTTACATCCTCCCTCTGGTCGTTACCTTCTGGAACCCAGGCAGGCCCAGGATTTCAGTTATTTAGCTCTGATGTGGATGTGTCAGATGCATTGGTCCATTTACAGCACGGTGATATTAATTGCTCTTCATCATTGAATGGTTATACATTGGCTCCAGATACTGCTTTGGGTTCTAGTACTCTCATACCAGATTCTTCTGCAAGACGTTCTGATGCTGATTTAAATGGTGGTTTGGTTGACAATCCACTGCCATTTACTGGAGAAGATCCCTCGCTTCAGATTTTTCTTCCAACAAGACCAGCAGACTCATCTGTGCAGGATGAATTGAGAGATCAGGAAGATGTATCAAATGGTATCTGCACTGAAAATTGGATCTCTCTTAGCCTTGGAGGTGGTGCTAGTTGCAGTAATGGTGATGCATCAACTACAAATGGATTGAATTCCAGACCACAAATTACACCAAAAGAAGGCCCCTCTAATACTTCAACCGATACTGCTTCTTTGCTTCTTGGCATGAATGATGTTAAATCTAACAAAGAAAGCAGACAAAGATCAGATAGCCCTTTCTCATTTCCTCGCCAAAAACGTTCAGTAAGGCCCCGCCTATATCTTTCCATTGATTCAGATTCGGAGTAG 2646 0.4206 MDLVSSCKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILSILSDEQVSRMWAKKNAVGTEQVAKLVDDTYRKLQGSGATDLASKGQGASDSSNVNVKAEMDDSFQSDTKIRCLCGSSLESEPLIKCEDTGCHVWQHINCVIIPEKPMEVTPPVPDKFYCETCRLSRADPFWVTLAHLLYPVSLTTTSIPTDGTNPVQSVDKTFQLTRANKDLISRPEFDVQAWCMLLNDKVSFRMQWPQYTDLQVNGFPVRAINRPGSQLLGANGRDDGPIITPYTKDGVNKISLTGCDARIFCLGVRIVRRRSMLQILNMIPKESEGERFEDALARVVSCVGGGNASDNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCIHMGCFDLEIFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITKMMRNCGEEVNEVEVKPDGSWRVKAKGEIERMELGNLAQWHCPDGSLSVSTGGEVKSVETSNLKQGGVSDSPAGLRLGIRKNCNGVWEVNKPDGTNTSSGNRLIEGFGNHEHVVIPMSSSSTGSGRGGDDRSVNQGGAGHIDYSTANGIEMDSLYHNIVDSAHGDAAHNTSAPVGAAEVIVLSDSDEDNDILASPTLGYENNQTGAARVVYSVPSHEVIDLYAEDQQLGGNPCSGLYNNPDEDDFGFTSSLWSLPSGTQAGPGFQLFSSDVDVSDALVHLQHGDINCSSSLNGYTLAPDTALGSSTLIPDSSARRSDADLNGGLVDNPLPFTGEDPSLQIFLPTRPADSSVQDELRDQEDVSNGICTENWISLSLGGGASCSNGDASTTNGLNSRPQITPKEGPSNTSTDTASLLLGMNDVKSNKESRQRSDSPFSFPRQKRSVRPRLYLSIDSDSE 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0171 881 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Lal25g0171 881 Pfam SAP domain 14 42 IPR003034 -
Lal25g0171 881 Pfam MIZ/SP-RING zinc finger 359 407 IPR004181 GO:0008270
Lal25g0171 881 MobiDBLite consensus disorder prediction 806 846 - -
Lal25g0171 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 447 IPR013083 -
Lal25g0171 881 MobiDBLite consensus disorder prediction 542 561 - -
Lal25g0171 881 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Lal25g0171 881 SMART sap_9 11 45 IPR003034 -
Lal25g0171 881 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 810 - -
Lal25g0171 881 SUPERFAMILY FYVE/PHD zinc finger 107 169 IPR011011 -
Lal25g0171 881 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 810 - -
Lal25g0171 881 SUPERFAMILY SAP domain 1 63 IPR036361 -
Lal25g0171 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 171 IPR013083 -
Lal25g0171 881 MobiDBLite consensus disorder prediction 806 881 - -
Lal25g0171 881 Gene3D SAP domain 1 59 IPR036361 -
Lal25g0171 881 ProSiteProfiles Zinc finger SP-RING-type profile. 346 429 IPR004181 GO:0008270
Lal25g0171 881 Pfam PHD-finger 114 166 IPR019787 -
Lal25g0171 881 SMART PHD_3 114 166 IPR001965 -
Lal25g0171 881 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0171 Lal-Chr25 1092482 1108581 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal25g0171 PHD 2.6e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0171 - - gmx:100793735 1382.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0171 25 1092482 1108581 Lal25g0171 25 1092482 1108581 ECH
Lal25g0171 25 1092482 1108581 Lal10g1239 10 18686169 18696195 LSH
Lal25g0171 25 1092482 1108581 Lal2g0276 2 1613442 1621469 PCT
Lal25g0171 25 1092482 1108581 Lal9g0262 9 1627218 1637963 PCT
Lal2g0276 2 1613442 1621469 Lal25g0171 25 1092482 1108581 PCT
Lal9g0262 9 1627218 1637963 Lal25g0171 25 1092482 1108581 PCT