Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0169 ATGGATTCCAATGACATAAACACTACCCTTAATTCCTCTCCATTTTCTCACTCTTCTTCTCCTCCACAACCTATAGCTCCTCTTCAAGTAGTGATGAGCCCTTGTGCTGCATGCAAGATTTTGAGGCGAAGATGTGCTGAAAAATGTGTATTGGCACCTTATTTTCCTCCCACTGAACCTTCCAAGTTTACCATTGCACACAAAGTCTTTGGAGCTAGCAACATCATCAAGTTCTTACAGAAACTTCCGGAGTCTGAAAGAGCTGATGCAGTGAGAAGCATGGTTTATGAGGCTGGTGCAAGAATAAGAGACCCAATATATGGTTGTGCAGGTGTAATATGCAACCTCCAAGAACAAATCAACCAGCTTCAAGCACAATTAGCAAAGACACAAGCTGAGGTTGTAAACATGCAATTGCAACAATCCAATCTTGTGGCTTTAATTTGCATGGAAATGACAGCACAACAGTCAATGGACAATTTTATTTCAAGTATTCACCACAACAATATTGGATATCAAAACTATCTCAACTTCTATGAGGAGAACATTAGCCTAAATTCATTGTTAGAGCCTCTTTGGACATGA 585 0.4 MDSNDINTTLNSSPFSHSSSPPQPIAPLQVVMSPCAACKILRRRCAEKCVLAPYFPPTEPSKFTIAHKVFGASNIIKFLQKLPESERADAVRSMVYEAGARIRDPIYGCAGVICNLQEQINQLQAQLAKTQAEVVNMQLQQSNLVALICMEMTAQQSMDNFISSIHHNNIGYQNYLNFYEENISLNSLLEPLWT 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0169 194 Coils Coil 113 140 - -
Lal25g0169 194 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 14 186 - -
Lal25g0169 194 ProSiteProfiles LOB domain profile. 33 134 IPR004883 -
Lal25g0169 194 Pfam Lateral organ boundaries (LOB) domain 34 131 IPR004883 -
Lal25g0169 194 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 186 - -
Lal25g0169 194 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0169 Lal-Chr25 1085787 1086949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0169 29 194 AS2 family AT1G07900 64.118 9.86e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lal25g0169 LOB 3.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0169 - - gmx:100819336 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0169 25 1085787 1086949 Lal25g0169 25 1085787 1086949 ECH
Lal25g0169 25 1085787 1086949 Lal10g1242 10 18701158 18702940 LSH
Lal25g0169 25 1085787 1086949 Lal8g0133 8 924099 925621 LSH
Lal25g0169 25 1085787 1086949 Lal1g0365 1 2212661 2216475 PCT
Lal25g0169 25 1085787 1086949 Lal2g0270 2 1572536 1573600 PCT
Lal1g0365 1 2212661 2216475 Lal25g0169 25 1085787 1086949 PCT
Lal2g0270 2 1572536 1573600 Lal25g0169 25 1085787 1086949 PCT