Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0165 ATGTTGATTTTTAACCTGAATGCTGATTCAAATGAGAACGGTGACTTACTCGAGCTGTTGGAAAAGATTCCAGAAGCTTCTTCGGGGACTTCGAATTCCTCAATCGTGAATGCGGATGGTTCTAGTAACATAGGAGGCAGCGATGACTCGTGCTCCACACGCGCCGGTAAAGGAATCGGCGTGTTCACCTTTGATTTCGGTATCATGAAGGTTGAAGGCAGGAATGATGTTGTTACGCCGACGAAGGAGCTGTTTCCGATGAGTTCCGGGAATTGGAAGATGCAGCAACAGTCAACGTTGCCGTTTCCGGCGAGGAAGGGTGGCGTGGATCTCTTGTGGGAACAGGGAGAGAACAGCGAGACGGTGAAGATGGTTCAGGCTCAGAAACCGGTGAAGAAGAGTAGGAGAGGACCAAGGTCTCGGAGTTCACAGTATAGAGGAGTCACTTTCTACAGAAGGACTGGTCGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGCTTTGATACCGCTCATGCTGCTGCTAGGGCCTATGATCGAGCTGCTATCCAGTTCAGGGGAGTTGATGCTGACATCAATTTCAATCTCATTGATTATGATGACGAACTTAAACCGATGAAGAATCTCTCCAAAGAGGAATTTGTGCAAACACTACGTCGCCAAAGTACTGGTTTCTCAAGGGGGGGCTCAAAATACAGAGGAGTAACACTTCAGAATTGTGGCCGTTCGGAAGCTCCAATGGGACAATTCCTTGGCAAAAAGGCTTATGACAAGGCAGCTATCAAGTGCAATGGAAGGGAGGCGGTGACCAACTTTGAGCCAAGTAAATATGAAAGCGACATGAAACCAAAAGCCATTAATGAAGGTGACAGTCACAATCTAGACCTCAATTTGGGCATAGCAACCCCAGGACATGGACCCAAAGAAAACAAGGAGAATCTTCAGTTCCAGCCTGTTCCTTACAACATGCATCTCGGAAGACATTCAAGGATGGAGACTAATGTTAATTCAGTTATTGATAATCCAGCTTTGAAAAGCCTGGTTGTAACTGAAGATCGCCCTTCTGTCTTGAATGCCACATATTCCAGTTTCTTTCCCACTCAGGAAAGAGGAGAGAGAATCGTCCCTCATCCTTATCAAGGACTCCAGAACTGGGCGTGGCAAACGCAAGGTGAGGTCACTGCTACCCCAATGGCACAGTTCTCTAAAGCAGCAGCATCATCAGGATTCTCAATTTCAGCTACATCTCCACCAAAATCTATGAACCCATTTCCCCAGAGTTTTTGTTTTACTTCACCCAGCACACCTGTTAGCATTGCACCTCAATACTATTACCAGGTGAAATCCCCTCAGGCACCACTCTAG 1380 0.4688 MLIFNLNADSNENGDLLELLEKIPEASSGTSNSSIVNADGSSNIGGSDDSCSTRAGKGIGVFTFDFGIMKVEGRNDVVTPTKELFPMSSGNWKMQQQSTLPFPARKGGVDLLWEQGENSETVKMVQAQKPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIQFRGVDADINFNLIDYDDELKPMKNLSKEEFVQTLRRQSTGFSRGGSKYRGVTLQNCGRSEAPMGQFLGKKAYDKAAIKCNGREAVTNFEPSKYESDMKPKAINEGDSHNLDLNLGIATPGHGPKENKENLQFQPVPYNMHLGRHSRMETNVNSVIDNPALKSLVVTEDRPSVLNATYSSFFPTQERGERIVPHPYQGLQNWAWQTQGEVTATPMAQFSKAAASSGFSISATSPPKSMNPFPQSFCFTSPSTPVSIAPQYYYQVKSPQAPL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0165 459 MobiDBLite consensus disorder prediction 27 50 - -
Lal25g0165 459 Gene3D AP2/ERF domain 143 201 IPR036955 GO:0003700|GO:0006355
Lal25g0165 459 SUPERFAMILY DNA-binding domain 143 200 IPR016177 GO:0003677
Lal25g0165 459 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 426 - -
Lal25g0165 459 Pfam AP2 domain 144 192 IPR001471 GO:0003700|GO:0006355
Lal25g0165 459 ProSiteProfiles AP2/ERF domain profile. 144 200 IPR001471 GO:0003700|GO:0006355
Lal25g0165 459 SMART rav1_2 236 284 IPR001471 GO:0003700|GO:0006355
Lal25g0165 459 SMART rav1_2 144 206 IPR001471 GO:0003700|GO:0006355
Lal25g0165 459 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0165 Lal-Chr25 1061545 1065365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0165 1 425 AP2-EREBP Transcription Factor Family AT5G60120 44.372 2.08e-89 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal25g0165 AP2 8.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0165 K09284 - gmx:100777102 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0165 25 1061545 1065365 Lal25g0165 25 1061545 1065365 ECH
Lal25g0165 25 1061545 1065365 Lal8g0127 8 873613 878098 LSH
Lal25g0165 25 1061545 1065365 Lal9g0249 9 1543291 1547233 PCT
Lal9g0249 9 1543291 1547233 Lal25g0165 25 1061545 1065365 PCT