Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0162 ATGGGTTGCTTTGGTTGCGCGGGAAAATCTAGCAAAAAATCCGATACCAACAATCCTACTTCTCCGGATAAGATCAAAGTTGATTTGAATGTGAATGGTAAAAAGGAAGATAAAAATTCGAAGGAAAATCAACTCTCTCTGAATGCAAAGAATTTGGACCCCAAAAAAGATCCTGTCAATGCAAACACATTTACCTTTGATGAGCTTGCAGCTGCAACAGGAAATTTTAGGTCAGATTGTTTTCTGGGTGAAGGAGGGTTTGGCAAGGTTTATAAGGGACACTTGGAGAAAATTAACCAGGTCGTAGCTATAAAGCAACTTGACCCTCACGGGGCACAAGGAGTTCGCGAATTTGTTGTTGAAGTGATAACCCTAAGTTCGGCAAACCATCCTAATCTAGTCAAGTTGACTGGGTTTTGTGCTGAGGGAGAGCAGAGGCTATTGGTTTATGAGTACATGCCATTGGGATCTTTGGAGAACCATTTGCATGATCTAAAACCGGGACAAAAACCAATTGATTGGTATACAAGAATGAAAATTGCAGCTGGTGCAGCTAGGGGTTTGGAGTATTTGCATGATAAAATGAAACCTCCCGTCATATACCGTGACCTGAAATGTTCAAACATTTTGTTAGGAGAGGGATATCATGCCAAGTTATCTGACTTTGGTTTGGCTAAAGTAGGTCCAAGCGGTGATAACACTCATGTTTCAACCAGGGTTATGGGTACATATGGGTATTGTGCCCCAGATTATGCAATGACGGGCCAGTTAACTTTCAAGTCTGATATTTACAGCTTTGGGGTCGTTCTTTTGGAACTCATCACAGGCAGGAAAGCTATAGACCATACAAAAGCCGGAAAAAAGCTAAATCTAGTTTCATGGGCAAGGCCCTTATTCCGAGACCGGAAAAGATTCACGCAGATGATTGATCCATTGCTTGAAGGTGAATTTCCAGTGAGAGGGTTATATCAAGCTCTTGCTATTGCTGCTATGTGTGTTCAGGAACAGCCTAATATGCGTCCAGCTATAGCCGATGTGGTTACAGCTCTAAACTACCTTGCATCTCAGAAACACGAAGATCAGTTTCATTCAGCGCAATGCTCTAGAGACAACTTATACTCTCCAAGAATGAAAAGGGGTGGTCATAGACGTTTAGCTAGTAGTGGTTCTGAGACAGACAAATCTGGTGAATAG 1194 0.4204 MGCFGCAGKSSKKSDTNNPTSPDKIKVDLNVNGKKEDKNSKENQLSLNAKNLDPKKDPVNANTFTFDELAAATGNFRSDCFLGEGGFGKVYKGHLEKINQVVAIKQLDPHGAQGVREFVVEVITLSSANHPNLVKLTGFCAEGEQRLLVYEYMPLGSLENHLHDLKPGQKPIDWYTRMKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEGYHAKLSDFGLAKVGPSGDNTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHTKAGKKLNLVSWARPLFRDRKRFTQMIDPLLEGEFPVRGLYQALAIAAMCVQEQPNMRPAIADVVTALNYLASQKHEDQFHSAQCSRDNLYSPRMKRGGHRRLASSGSETDKSGE 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0162 397 SUPERFAMILY Protein kinase-like (PK-like) 61 360 IPR011009 -
Lal25g0162 397 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 379 - -
Lal25g0162 397 MobiDBLite consensus disorder prediction 28 43 - -
Lal25g0162 397 Pfam Protein tyrosine and serine/threonine kinase 81 348 IPR001245 GO:0004672|GO:0006468
Lal25g0162 397 ProSiteProfiles Protein kinase domain profile. 76 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal25g0162 397 Gene3D Phosphorylase Kinase; domain 1 47 152 - -
Lal25g0162 397 MobiDBLite consensus disorder prediction 365 397 - -
Lal25g0162 397 PANTHER OS07G0668900 PROTEIN 1 379 - -
Lal25g0162 397 MobiDBLite consensus disorder prediction 10 25 - -
Lal25g0162 397 Gene3D Transferase(Phosphotransferase) domain 1 153 374 - -
Lal25g0162 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Lal25g0162 397 SMART serkin_6 76 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal25g0162 397 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
Lal25g0162 397 CDD STKc_IRAK 82 351 - -
Lal25g0162 397 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0162 Lal-Chr25 1035733 1039466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0162 1 355 Glycoside Hydrolase AT3G07070 57.500 7.92e-146 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lal25g0162 PK_Tyr_Ser-Thr 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0162 - - gmx:100794680 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0162 25 1035733 1039466 Lal25g0162 25 1035733 1039466 ECH
Lal13g1140 13 8722915 8726007 Lal25g0162 25 1035733 1039466 ECH
Lal25g0162 25 1035733 1039466 Lal10g1247 10 18730549 18739542 LSH
Lal25g0162 25 1035733 1039466 Lal9g0247 9 1533217 1536834 PCT
Lal9g0247 9 1533217 1536834 Lal25g0162 25 1035733 1039466 PCT