Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0154 ACCTGGCTTAGGAAAACAGAAGCAAAAATGGTTCAACAAGCAATGAAAAAAGGTCCATGGACAGAACAAGAGGACTTCAAATTGGTGTACTATGTTGGCTTATTTGGAGACCGTAAATGGGACCATATAGCTAAGGTTTCAGGTTTGAATAGAACAGGTAAGAGTTGCAGGCTAAGATGGGTTAATTACCTTCATCCTGGTCTCAAACGAGGGAAGATGACACCTCAGGAAGAGAAACTTGTGCTGGAACTTCACTCAAAATGGGGAAACAGATGGTCAAGAATTGCTCGCAAATTACCTGGGCGCACAGACAATGAAATTAAGAATTATTGGAGGACTCACATGAGGAAGATGGCACAAGAGAAAAAGAGAGCACAAGTTCCATCACAAACTTCTTCTGCCTGCCATTCCTCAATATCCTCCCCAAACAATCATGCAGTGGATTCAAATGCTTCCAAAAATGCTGGAGAAGAATGCATTTATGACACAGGAGGTCCTAATCTGAAAGGATTGTCAAGTGAAGTTAACATATTAGAAGATCAAGAAGGGTTCTCTATGGATGATATATGGAAAGAAATTGATATGTCAGAAGAAAACATTGTGCAGCCAATCTATGATTATGGTAACAACTTTTCTTGTCCATCAAGGGAGTATTGTTTAGACCCTCTATGGGGTGTGATGGATGAAGAAAGTAGGCTATTCTCAACAAGTGACCCTTATTTTTCTTGCTACACACATGGCAGCACATTTCTAACTGGCTAA 762 0.4029 TWLRKTEAKMVQQAMKKGPWTEQEDFKLVYYVGLFGDRKWDHIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEEKLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKMAQEKKRAQVPSQTSSACHSSISSPNNHAVDSNASKNAGEECIYDTGGPNLKGLSSEVNILEDQEGFSMDDIWKEIDMSEENIVQPIYDYGNNFSCPSREYCLDPLWGVMDEESRLFSTSDPYFSCYTHGSTFLTG 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0154 253 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Lal25g0154 253 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 12 237 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lal25g0154 253 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Lal25g0154 253 SMART sant 69 117 IPR001005 -
Lal25g0154 253 SMART sant 16 66 IPR001005 -
Lal25g0154 253 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 12 237 - -
Lal25g0154 253 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Lal25g0154 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Lal25g0154 253 MobiDBLite consensus disorder prediction 123 151 - -
Lal25g0154 253 CDD SANT 72 115 IPR001005 -
Lal25g0154 253 CDD SANT 19 64 IPR001005 -
Lal25g0154 253 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Lal25g0154 253 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Lal25g0154 253 Gene3D - 72 141 - -
Lal25g0154 253 MobiDBLite consensus disorder prediction 124 151 - -
Lal25g0154 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 64 IPR017930 -
Lal25g0154 253 Gene3D - 8 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0154 Lal-Chr25 969761 971244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0154 9 251 MYB Transcription Factor Family AT5G59780 55.118 6.25e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal25g0154 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0154 K09422 - tcc:18590753 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0154 25 969761 971244 Lal25g0154 25 969761 971244 ECH
Lal2g0246 2 1449305 1450660 Lal25g0154 25 969761 971244 PCT