Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0151 ATGTCTGCAGCACTTGATATGACGCTTGATGACATCATCAAGAACAACAAGAAATCTGGATCTTCTAACTCTCGTGGCAGAAACCGCGCTTCCGGATCCGGTCCAGGACCGGCTCGCCGATTCACAAACCGTGCCGTTAACCGTGCTGCACCTTATAGCACCACCGCTAAGGCGCCGGAGACAGCGTGGCAGCATGATTTGTATGCAGATCAGGCTTTGAATTTGGCGGCGGCGTTCCCTGCACAAGGTGGCCGACCGTCTTCAATTGAAACGGGGACCAAGCTCTATATATCTAATTTAGATTATGGTGTCTCCAATGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGATGTGAAAAGGCATACCGTACACTACGACAGGAGTGGGAGATCAAAGGGTACAGCAGAAGTAGTGTTCTCGCGACGAGCTGATGCTGTAGCTGCGGTGAAGAGGTACAACAATGTTCAACTAGATGGTAAACCGATGAAGGTGGAGATTGTGGGAACAAACATTACTACACATGCTATGGCGGTGCCTGCTGCAAATGCAGCTTTTGGAATTACAAATGGATTTCCAAGAAGTGGACAAGGGAGAAGTGGGGCATTAGGAAGGCCACGCGGTGGAGGAAGTAGAGGACGTGGTGGAGCTCGAAGGGGTCGTGGACGTGGAAGCGGAAGTGGAAGAGGTCGTGATGAAAAGGTATCTGCAGAAGACCTTGATGCTGATTTGGAGAAGTATCATGAAGAGGCAATGCAATTAAACTAA 768 0.4883 MSAALDMTLDDIIKNNKKSGSSNSRGRNRASGSGPGPARRFTNRAVNRAAPYSTTAKAPETAWQHDLYADQALNLAAAFPAQGGRPSSIETGTKLYISNLDYGVSNDDIKELFSEVGDVKRHTVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKVEIVGTNITTHAMAVPAANAAFGITNGFPRSGQGRSGALGRPRGGGSRGRGGARRGRGRGSGSGRGRDEKVSAEDLDADLEKYHEEAMQLN 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0151 255 Gene3D - 81 237 IPR012677 -
Lal25g0151 255 CDD RRM_THOC4 93 167 - -
Lal25g0151 255 SMART rrm1_1 94 166 IPR000504 GO:0003723
Lal25g0151 255 MobiDBLite consensus disorder prediction 225 255 - -
Lal25g0151 255 MobiDBLite consensus disorder prediction 190 255 - -
Lal25g0151 255 SMART FoP_duplication_2 182 255 IPR025715 -
Lal25g0151 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 163 IPR000504 GO:0003723
Lal25g0151 255 MobiDBLite consensus disorder prediction 14 30 - -
Lal25g0151 255 MobiDBLite consensus disorder prediction 14 57 - -
Lal25g0151 255 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 254 - -
Lal25g0151 255 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 254 - -
Lal25g0151 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 170 IPR000504 GO:0003723
Lal25g0151 255 Coils Coil 237 255 - -
Lal25g0151 255 SUPERFAMILY RNA-binding domain, RBD 80 168 IPR035979 GO:0003676
Lal25g0151 255 Pfam C-terminal duplication domain of Friend of PRMT1 195 249 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0151 Lal-Chr25 946989 955926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0151 92 167 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 2.39e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0151 K12881 - gmx:100783362 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0151 25 946989 955926 Lal25g0151 25 946989 955926 ECH
Lal25g0151 25 946989 955926 Lal8g0110 8 775728 780745 LSH