Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0146 ATGGCAGACACAGAAGATATTCAGCCACTCGTCTGCGATAATGGCACAGGAATGGTTAAGGCTGGATTTGCTGGAGATGATGCACCAAGGGCAGTGTTTCCTAGCATTGTTGGTCGACCACGTCATACAGGTGTGATGGTTGGAATGGGACAAAAAGATGCATATGTTGGTGATGAAGCTCAATCAAAACGTGGTATATTAACTTTGAAATATCCAATTGAACATGGTATTGTGAGCAATTGGGATGACATGGAGAAGATATGGCATCACACATTTTATAATGAACTTCGTGTAGCCCCAGAAGAACATCCAGTTTTGCTCACTGAAGCACCTCTTAATCCAAAGGCTAATCGTGAAAAAATGACCCAAATTATGTTTGAGACTTTCAACACACCTGCTATGTATGTTGCTATTCAGGCTGTTTTGTCTCTCTATGCAAGTGGTCGTACAACTGGTATTGTTTTGGATTCTGGTGATGGTGTAAGCCATACTGTACCAATTTATGAAGGGTATGCTCTCCCTCATGCAATCCTTCGTCTTGACTTAGCAGGGCGTGACCTCACTGATGCCCTAATGAAAATCCTTACTGAACGTGGCTATTCCTTCACCACCACAGCTGAACGTGAAATAGTAAGAGATGTGAAGGAAAAGTTAGCCTATATTGCTCTTGATTATGAACAAGAGCTTGAAACTTCAAAAACTAGCTCTTCTGTTGAGAAGAGTTATGAGTTACCTGATGGACAAGTCATCACCATTGGTGCTGAACGTTTTCGTTGTCCTGAAGTTCTATTCCAACCATCCATGATTGGAATGGAAGCTGTTGGTATTCATGAAACTACATATAATTCAATTATGAAGTGTGATGTTGATATCAGAAAAGACTTGTATGGAAACATTGTACTTAGTGGTGGTTCTACTATGTTCCCTGGTATAGCTGATAGAATGAGCAAGGAAATCACTGCTTTGGCACCAAGTAGCATGAAGATTAAGGTTGTTGCTCCACCTGAGAGAAAGTATAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACCTTCCAACAGATGTGGATTGCAAAAGCAGAGTACGATGAGTCTGGCCCTTCAATTGTACACAGGAAATGCTTTTAA 1134 0.4136 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAVGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0146 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lal25g0146 377 SMART actin_3 7 377 IPR004000 -
Lal25g0146 377 Gene3D - 140 340 - -
Lal25g0146 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Lal25g0146 377 PANTHER ACTIN 3 1 376 - -
Lal25g0146 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Lal25g0146 377 Pfam Actin 5 377 IPR004000 -
Lal25g0146 377 Gene3D - 10 371 - -
Lal25g0146 377 PANTHER ACTIN 1 376 IPR004000 -
Lal25g0146 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lal25g0146 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Lal25g0146 377 PRINTS Actin signature 28 37 IPR004000 -
Lal25g0146 377 PRINTS Actin signature 51 62 IPR004000 -
Lal25g0146 377 PRINTS Actin signature 63 85 IPR004000 -
Lal25g0146 377 PRINTS Actin signature 117 130 IPR004000 -
Lal25g0146 377 PRINTS Actin signature 142 161 IPR004000 -
Lal25g0146 377 PRINTS Actin signature 238 254 IPR004000 -
Lal25g0146 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Lal25g0146 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0146 Lal-Chr25 924109 926970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0146 1 377 Cytoskeleton Gene Families AT3G12110 97.082 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0146 K10355 - gmx:100815472 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0146 25 924109 926970 Lal25g0146 25 924109 926970 ECH
Lal1g0325 1 1973499 1976410 Lal25g0146 25 924109 926970 ECH
Lal25g0146 25 924109 926970 Lal8g0105 8 747128 750555 LSH
Lal25g0146 25 924109 926970 Lal1g0325 1 1973499 1976410 PCT
Lal25g0146 25 924109 926970 Lal2g0229 2 1335338 1338135 PCT
Lal25g0146 25 924109 926970 Lal9g0228 9 1394994 1399328 PCT
Lal1g0325 1 1973499 1976410 Lal25g0146 25 924109 926970 PCT
Lal2g0229 2 1335338 1338135 Lal25g0146 25 924109 926970 PCT
Lal9g0228 9 1394994 1399328 Lal25g0146 25 924109 926970 PCT