Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0145 ATGTTTTTGTGGCCTTTCAAAGGACCCATTCATGAAATTAACAACCTTGTCCCATCCACTCATATTAAATTTGATAAGGGTTTTACTCCGACCGCTATAACACATCCGGATACTTACCTCAATAAGGTTCTTATTGGGAGTGAACAAGGTCCTATGCAGCTTTGGAATATTAGCACTAAGAAAATGATATTTGAGTTTAAGGGATGGAATTCTCCTATCACGTGTTGTGTTTCGTCGCCTGCTCTGGATGTTGTTGCTGTTGGTTGTGCAGATGGAACCATTCATATTCACAACATTCGCATCGATCAAGAGTTGGTTACTTTTACACATTCTACACGAGGTTCTGTTACTGCCTTATCTTTCAGCACTGATGGGCAACCCCTTCTAGCTTCTGGTGGTTCATCTGGTGTCATAAGCATATGGAATTTGGAAAAGAAAAGGCTCCAGTCAGTTGTAAGAGAGGCTCATGATAACGTGATCACTTCACTACATTTTTTTGCTAATGAGCCAGTGCTAATGAGTTCATCAGCAGACAACTCTGTTAAAATGTGGATTTTTGACACAAGTGATGGTGATCCTCGTCTTTTGCGTTTTCGAAGTGGGCATAGTGCTCCTCCCCTTTGCATAAAGTTTTATGCCAACGGAAGACATATCCTTTCTGCTGGTCAGGATCGTGCCTTTCGGATTTTCTCTGTAGTTCAGGATCAACAAAGTAGGGAGCTTTCTCAACGCCATGTCTCTAAACGTGCTAAGAAACTGAGAGTAAAGGAGGAAGAAATAAAATTGAAGCCTGTCATTGCATTTGATTGCGCTGAAATTAGAGAACGTGATTGGTGCAATGTGGTTACATGCCATATGGATACTGCCCAGGCATATGTGTGGAGACTTCAAAATTTTGTTCTGGGTGAGCATATATTAAATCCGTGTCCAGAAAATCCAACACCTGTGAAGGCTTGTGCCATCAGTGCATGTGGCAATTTTGCCATTTTGGGGACAGCGGGTGGTTGGATTGAAAGGTTTAACCTTCAATCTGGAATCAGCCGGGGTGCATACTTTGACATGTCTGAACCAAGAAGTTGTGCTCATGATGGTGAAGTGGTTGGAGTTGCTTGTGACTCAACAAATACTCTCATGATAAGTGCGGGATATCAAGGAGATATAAAGGTTTGGGATTTCAAAGAACGTCAACTTAAATCCAGATGGGAGATCGGTTGTTCTGTTGTTAAGATTGTGTACCATCGTTATAATGGACTCCTTGCTACAGTGGCGGATGATTTAACAATCAGATTGTTTGATGTCGTGGCTCTTAGACTTGTTCGTAAGTTTGAAGGTCACACAGATCGTATAACTGATTTGTGCTTCAGTGAGGATGGGAAGTGGCTTCTGTCATCTAGTATGGATGGATGTCTTCGAATTTGGGATGTGATATTGGCAAGGCAGATAGATGCAATTCAGGTTGATGTGCCTATCACAGCATTATCTTTATCCCCTAACATGGATATATTAGCAACTACCCATGTTGATCAAAATGGGGTGTACCTTTGGGTAAACCAGACAATGTTCTCTAGTACTTCAAATGTCGACTCCTATGCAAGTGTAAAAGAGGTTTTGAGTGTCAAATTGCCATCAATCTCTTCCACGGAACATTCTCAAGTTGAGCATTCTGATGAGCTCGTGAATGCCACTCGCCCTAAAGATACTCCAGTTTTTCAAGCTGAAGATAAGCAAATACCTGATTTAGTTACCCTTTCATTGCTGCCTAAGAGCCAGTGGCAAAGCCTGATCAATTTAGACATTATAAAGGTACGTAATAAACCAATTGAGCCTCCAAAAAAGCCTGAAAAGGCCCCATTTTTCTTGCCTTCAGTTCCATCCCTCTCAGGGGAAATATTGTTTGAGCCTGGTAAGTTATCTGCGGACGAAAAGAATGAAACAGGTGATGAAAAACAAGTGAAGAAGGCAAGAGTAGATTTGCCATCATCTCGTTTTCTGCACCTTCTTCAATCCTCAAAAGAGACAAACAATTATGCAGCATTCACTGATTATATCAAAGGTTTATCTCCGTCAACTCTGGATATGGAACTTAGAATGTTTCAGATCATAGATGATGATGATGAGCAAGAAGTTGAGAAGATGCCTGAGTTGGTATCAATTGAACAGTTTCTGGATTATTTTATCCATGAGCTCTCCTCCAGAAATAATTTTGAGTTTCTACAAGCTGTGATCAGGTTATTTTTGAAGATACATGGTGAGACAATTCGGCAGCATTCACACTTACAAGAAAAGGCAAGGAGGCTCCTAGATATTCAATGCTTGCACTTGCTTTCTTCTAAGAAGACCACTATTGAAATTGAAGACAATAATAATAATAATTCAGGATGCATGTGGGGTATACTTCATATTCTTGACTATCATCATTGGCATGTCAAAAGGGTATTACCTCACAAAAGACATGCCAGATATAATAAAAAAACCATTTTGCATAACCAAGGCGAAAATGCAGAAGCAGAACTCCTCCTTGTAGGGCAACATGGCAACAATTTGAGTGCTACAGGCAAGAGTTCCTCCGAAAATGGGAAGAACTCAGGACAATACACCAAGGAGTCTTTACATTTGGAGAAAGATGGCATGTCAACAGAAGCTTCCCTTAATGAAACATATTTGGAAACAAACATGCTTAAGAGAGACATTTCCAATAAACTTAAGAAGCATAATGATATTTTGAAGATATGTGGTGTGGAGAAGGATTTACTTCTCAAGTTTCTGCATGATTTAGATGTTAGTAGGAAAAAACTCCAAGCTTCCAGCAATAAAGCAAGATTGACAAAATCAGGGTCATTTCCTTTAACCGAATCTTCGAAGATGAGAAGCATAAGCACTCGTACCTTCAAATACAAGCAAACTGAAATTTGGGCCTTCCCCAAGGGAGAAAAGCTGCTTGTTGGTACTCAAGCACCAAAAATTTCTGCATCTACTTTGGTGAAAGATATTTCTATGGAACAAAAACCGAGCACTTATTCAAGGTCTTCACGAGGTTTAAATCACAAAGGTTGGAATCAATTGGTTCTTCATAGCTTTAAAGTTATAAAGCAGAAGATAAAACATGCTCTTGTGGAGGCAATTCACCGTAGATATTCACCAAAATATAGTATTACCAATGATGAGAAAGTGGTGTCACAAATCTTAGATGATGGTGTGATTCAAGAATATGAAAAGAATGAAAGCTCAAATGAGACTAAAGCTTATGATTCCAACAAACATGAAGTTCGCCTAATGCGAAGAACATCCTCTCTGAATGAATCTCTTGATAGATATACTCAGTTGTTTGAGAAAAGCTTCAGCAATGATGTCAAATGGCATAGCTCAAAGTCTAAAAGCTTAAGATTAACAAATGAAGATAAGGTTCTCAAGAGTGGAAATGCTCCTAAGTTTTCCAGAAGCAATTTCTCTCTGCCTAGTCTCGAGTCTTTACGCTTCATTCTACATGAGGTACTTCTTGACACAAATATAGGGGACACAGTGGAAACTGATAATCATGTTCAAGGAAAATCAGTGAGCTTTTCTTTACACACTGACAAACCACTCGATCAGATCGAAGAGAACGAGATCACGGAAACAGTAGAAGGAGATGGCGAGGATGTGAATTCTAGTCCTTTATCAGGTAAGATTGTGAATGAAATTGATGGAGTTACCTGTGATCAAAGGGAGGACATACATGAGATACCAGTAGAAGATGGAACTTTTTCCCATGAAAATGTTGAAATAAGCATGACTATCTATCCTAACAAGGAGGTATTAGCATCTCTTGAATCTAGCAGTGAAAACAGTACAATGAGGAATGCAGAAGGTGGAGAATTGGAGACTGATTTAGCAAAAAGAGGAAGTGTAAATTCTTTTGAAGGCTCTTTATCCAACACAAATGCTAGTGTAACAGCAAAAGACACAAACAATAGTCCTGACAATCATTTCATGCTCCATAAATCAGTTACAAACAACAACTCCAACTTCATGTATGTGAAAAAGATTCTTGAAGTTTCTGGCTTCATGGGAAATGAGCAGAATCAAATGTGGCACACAGTAGAGCAGCCTCTAAAGCCTTCTTTACTAAAGGATTTGGATAATGATATTGAATTCTCTGGAGAAGAGATTGTTAGTCCCTATGATCACCAACTTCTATTTAACTTGGTTAATGATGTTCTTATTGAAATAGATGAAATGTCACCAACTTACTTCCCTAAACCCTTCTCCTTCAACTACTGCCTTCGTCCAACGCCGAAGGAGTACTATCTTCTTAATGAAGTATGGACTAGTGTTAACTCATACCTGAGCTTGAGGCCAGAGCTAGATCAGACATTAGATGATGTCGTAAGTCGCGATTTGGCAAAAGGAAGTGGCTGGATGAACCTTCAACAGGAAGAGGAGTATGTAGCACTTGAAGTAGAAGAGATGATTATGCATGATTTATTAGATGAACTTATCTTCTCATGA 4488 0.393 MFLWPFKGPIHEINNLVPSTHIKFDKGFTPTAITHPDTYLNKVLIGSEQGPMQLWNISTKKMIFEFKGWNSPITCCVSSPALDVVAVGCADGTIHIHNIRIDQELVTFTHSTRGSVTALSFSTDGQPLLASGGSSGVISIWNLEKKRLQSVVREAHDNVITSLHFFANEPVLMSSSADNSVKMWIFDTSDGDPRLLRFRSGHSAPPLCIKFYANGRHILSAGQDRAFRIFSVVQDQQSRELSQRHVSKRAKKLRVKEEEIKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILNPCPENPTPVKACAISACGNFAILGTAGGWIERFNLQSGISRGAYFDMSEPRSCAHDGEVVGVACDSTNTLMISAGYQGDIKVWDFKERQLKSRWEIGCSVVKIVYHRYNGLLATVADDLTIRLFDVVALRLVRKFEGHTDRITDLCFSEDGKWLLSSSMDGCLRIWDVILARQIDAIQVDVPITALSLSPNMDILATTHVDQNGVYLWVNQTMFSSTSNVDSYASVKEVLSVKLPSISSTEHSQVEHSDELVNATRPKDTPVFQAEDKQIPDLVTLSLLPKSQWQSLINLDIIKVRNKPIEPPKKPEKAPFFLPSVPSLSGEILFEPGKLSADEKNETGDEKQVKKARVDLPSSRFLHLLQSSKETNNYAAFTDYIKGLSPSTLDMELRMFQIIDDDDEQEVEKMPELVSIEQFLDYFIHELSSRNNFEFLQAVIRLFLKIHGETIRQHSHLQEKARRLLDIQCLHLLSSKKTTIEIEDNNNNNSGCMWGILHILDYHHWHVKRVLPHKRHARYNKKTILHNQGENAEAELLLVGQHGNNLSATGKSSSENGKNSGQYTKESLHLEKDGMSTEASLNETYLETNMLKRDISNKLKKHNDILKICGVEKDLLLKFLHDLDVSRKKLQASSNKARLTKSGSFPLTESSKMRSISTRTFKYKQTEIWAFPKGEKLLVGTQAPKISASTLVKDISMEQKPSTYSRSSRGLNHKGWNQLVLHSFKVIKQKIKHALVEAIHRRYSPKYSITNDEKVVSQILDDGVIQEYEKNESSNETKAYDSNKHEVRLMRRTSSLNESLDRYTQLFEKSFSNDVKWHSSKSKSLRLTNEDKVLKSGNAPKFSRSNFSLPSLESLRFILHEVLLDTNIGDTVETDNHVQGKSVSFSLHTDKPLDQIEENEITETVEGDGEDVNSSPLSGKIVNEIDGVTCDQREDIHEIPVEDGTFSHENVEISMTIYPNKEVLASLESSSENSTMRNAEGGELETDLAKRGSVNSFEGSLSNTNASVTAKDTNNSPDNHFMLHKSVTNNNSNFMYVKKILEVSGFMGNEQNQMWHTVEQPLKPSLLKDLDNDIEFSGEEIVSPYDHQLLFNLVNDVLIEIDEMSPTYFPKPFSFNYCLRPTPKEYYLLNEVWTSVNSYLSLRPELDQTLDDVVSRDLAKGSGWMNLQQEEEYVALEVEEMIMHDLLDELIFS 1495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0145 1495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 153 184 - -
Lal25g0145 1495 PANTHER WD REPEAT-CONTAINING PROTEIN 36 15 771 - -
Lal25g0145 1495 Pfam Domain of unknown function (DUF4378) 1336 1491 IPR025486 -
Lal25g0145 1495 SMART WD40_4 192 231 IPR001680 GO:0005515
Lal25g0145 1495 SMART WD40_4 394 432 IPR001680 GO:0005515
Lal25g0145 1495 SMART WD40_4 435 474 IPR001680 GO:0005515
Lal25g0145 1495 SMART WD40_4 102 142 IPR001680 GO:0005515
Lal25g0145 1495 SMART WD40_4 477 516 IPR001680 GO:0005515
Lal25g0145 1495 SMART WD40_4 353 391 IPR001680 GO:0005515
Lal25g0145 1495 SMART WD40_4 145 185 IPR001680 GO:0005515
Lal25g0145 1495 SMART WD40_4 59 98 IPR001680 GO:0005515
Lal25g0145 1495 ProSiteProfiles Trp-Asp (WD) repeats profile. 442 475 IPR001680 GO:0005515
Lal25g0145 1495 Pfam WD domain, G-beta repeat 438 474 IPR001680 GO:0005515
Lal25g0145 1495 Pfam Anaphase-promoting complex subunit 4 WD40 domain 79 166 IPR024977 -
Lal25g0145 1495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 442 475 - -
Lal25g0145 1495 Pfam Utp21 specific WD40 associated putative domain 575 770 IPR007319 GO:0006364|GO:0032040
Lal25g0145 1495 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 151 IPR001680 GO:0005515
Lal25g0145 1495 SUPERFAMILY DPP6 N-terminal domain-like 41 126 - -
Lal25g0145 1495 Gene3D - 4 198 IPR015943 GO:0005515
Lal25g0145 1495 Gene3D - 199 546 IPR015943 GO:0005515
Lal25g0145 1495 ProSitePatterns Trp-Asp (WD) repeats signature. 461 475 IPR019775 -
Lal25g0145 1495 SUPERFAMILY Soluble quinoprotein glucose dehydrogenase 107 474 IPR011041 -
Lal25g0145 1495 ProSiteProfiles Trp-Asp (WD) repeats profile. 153 184 IPR001680 GO:0005515
Lal25g0145 1495 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 400 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0145 Lal-Chr25 903915 923760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0145 906 1485 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 29.984 1.42e-40 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0145 K14554 - gmx:100798946 1335.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0145 25 903915 923760 Lal25g0145 25 903915 923760 ECH
Lal25g0145 25 903915 923760 Lal10g1263 10 18836744 18839177 LSH