Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0143 ATGGGAATTTGTTTGAGTAACCAAATTAAAGCTGAAAGCCCTTATAATACTGGGCTAAATTCAAAGCATGTGAATACAGATGGAACTGATCTGGGAAGAAATAATAGCAAGGCCTCAGTAGTCTCGGTACCACGGAGCGAGGGTGAGATCTTGCAGTCATCCAATTTAAAGAGCTTTACTTTCGCCGAACTTAAGACAGCAACCAGAAATTTCCGACCGGACAGTGTGTTAGGAGAAGGCGGATTCGGATCAGTTTTTAAGGGGTGGATTGATGAGAAAACATTGGCTCCTGCCAAACCTGGCACTGGTATTGTTATTGCTGTCAAAAGACTTAATCAAGATGGCATACAAGGTCACAAGGAGTGGTTGGCTGAAGTGAACTTTCTAGGACAGTTTTCTCATCCTCATCTTGTGAAATTGATTGGATATTGCCTTGAAGATGAACACCACCTTCTTGTCTATGAATTTATGCCTCGTGGAAGCTTGGAGAATCATTTGTTTAGGAGTGAGCTCTTCCTGTCCCATCATTTCACATATTTTAACTTGACAAGAGGTTCATATTTTCAACCACTTTCTTGGAGCCTCCGGTTGAAGGTTGCTCTTGATGCTGCCAAAGGACTTGCTTTTCTGCACAAGGCTGAAAACAAAGTCATATATCGAGATTTCAAGACTTCAAATATCTTACTGGATTCGAATTATAAAGCAAAACTTTCGGATTTCGGGCTAGCGAAGGATGGACCAACAGGCGACAAAAGTCATGTCTCAACCAGGGTAATGGGAACCTATGGATATGCAGCTCCAGAATATATAGCCACTGGTCATCTTACTACTAAGAGTGATGTCTATAGTTTTGGAGTTGTCCTACTAGAAATGATATCGGGCAAGCGAGCAGTTGACAAGAATCGACCCTATGGAGAACACAATTTGGTGGAATGGGCTAAACCATACCTGGCTAACAAACGCAAGATTTTCTATGTGTTGGATAGTCGTCTTAAAGGGCAGTACTCAACAGAAGATGCTCATAAGGTATCGACCCTTGCTTTGCGATGCCTATCAACAGAAATCAAGCACAGACCCAACATGGATAAAGTTGTTGCAATTTTGGAAGAGTTGCAAGTTTCTAATGTAAATGGAGGCAATCAAAGCCCTTCTGTTGATCGGTCACGGGCTCGTAGAAAAAGCGCTGATGATGCTAACCATGGAAGGGTTCCCACGCCTTATCCTCGACCCTCAGCTTCCCCTCTCTATGCTTGA 1254 0.4282 MGICLSNQIKAESPYNTGLNSKHVNTDGTDLGRNNSKASVVSVPRSEGEILQSSNLKSFTFAELKTATRNFRPDSVLGEGGFGSVFKGWIDEKTLAPAKPGTGIVIAVKRLNQDGIQGHKEWLAEVNFLGQFSHPHLVKLIGYCLEDEHHLLVYEFMPRGSLENHLFRSELFLSHHFTYFNLTRGSYFQPLSWSLRLKVALDAAKGLAFLHKAENKVIYRDFKTSNILLDSNYKAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYIATGHLTTKSDVYSFGVVLLEMISGKRAVDKNRPYGEHNLVEWAKPYLANKRKIFYVLDSRLKGQYSTEDAHKVSTLALRCLSTEIKHRPNMDKVVAILEELQVSNVNGGNQSPSVDRSRARRKSADDANHGRVPTPYPRPSASPLYA 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0143 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Lal25g0143 417 ProSiteProfiles Protein kinase domain profile. 71 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal25g0143 417 Gene3D Transferase(Phosphotransferase) domain 1 157 391 - -
Lal25g0143 417 Pfam Protein tyrosine and serine/threonine kinase 75 367 IPR001245 GO:0004672|GO:0006468
Lal25g0143 417 MobiDBLite consensus disorder prediction 376 417 - -
Lal25g0143 417 Gene3D Phosphorylase Kinase; domain 1 46 156 - -
Lal25g0143 417 PANTHER OS01G0588500 PROTEIN-RELATED 33 399 - -
Lal25g0143 417 SUPERFAMILY Protein kinase-like (PK-like) 38 368 IPR011009 -
Lal25g0143 417 ProSitePatterns Protein kinases ATP-binding region signature. 77 109 IPR017441 GO:0005524
Lal25g0143 417 PANTHER KINASE 1B 33 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0143 Lal-Chr25 893657 896931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0143 49 368 Glycoside Hydrolase AT3G07070 48.910 1.41e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal25g0143 PK_Tyr_Ser-Thr 7.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0143 - - gmx:100798404 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0143 25 893657 896931 Lal25g0143 25 893657 896931 ECH
Lal25g0143 25 893657 896931 Lal8g0103 8 737095 739824 LSH
Lal25g0143 25 893657 896931 Lal2g0225 2 1316141 1322979 PCT
Lal2g0225 2 1316141 1322979 Lal25g0143 25 893657 896931 PCT