Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0141 ATGGCTATGGCTATGGCTATGGCCATTGTGATGTACCTTACCTTTCTTATGTCCCTATTAATGTGTATGGTTGAGGCCAGAATTCCAGGGGTTTACACTGGTGGTGCTTGGCAAAGTGCTCATGCCACCTTCTATGGAGGAGCTGATGCTTCTGGCACCATGGGAGGAGCATGTGGGTATGGAAACTTGTATAGCCAAGGTTATGGAGTGAAAACAGCAGCATTGAGCACAGCACTTTTCAACAATGGGTTAAGTTGTGGTGCTTGTTTTGAGATCAAGTGTGCAAATGACAAAGAATGGTGCCATTCAGGAAGCCCATCAATATTTATTACAGCCACCAATTTCTGTCCCCCAAACTATGCTCTTCCAAATGACAATGGAGGATGGTGCAACCCACCTCGTCCACACTTTGATCTTGCCATGCCTATGTTCCTTAAGATTGCTCAATATCGTGCTGGCATTGTACCTGTTGCATTTCGAAGGGTGCCATGCAGAAAGCCTGGTGGGATCAGGTTCACAATCAACGGCTTTCGTTATTTCAATCTTGTTTTGATCAGTAATGTCGCGGGTGCAGGAGACATTGTTCATGCCTATGTTAAGGGTTCCCGAACCGGGTGGATGCCGATGAGCCGAAATTGGGGTCAGAATTGGCAATCTAATGCGGTCTTCGTTGGCCAAGCCGTTTCATTCCGGGTCACTGGCAGCGACCACCGCACCTCCACCTCTTGGAACATTGTTCCGCCTAATTGGCAATTCGGCCAAACTTTCACCGGAAAGAATTTCCGGGTTTAA 792 0.4747 MAMAMAMAIVMYLTFLMSLLMCMVEARIPGVYTGGAWQSAHATFYGGADASGTMGGACGYGNLYSQGYGVKTAALSTALFNNGLSCGACFEIKCANDKEWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAFRRVPCRKPGGIRFTINGFRYFNLVLISNVAGAGDIVHAYVKGSRTGWMPMSRNWGQNWQSNAVFVGQAVSFRVTGSDHRTSTSWNIVPPNWQFGQTFTGKNFRV 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0141 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 258 IPR007117 -
Lal25g0141 263 PRINTS Expansin signature 67 81 IPR002963 GO:0009664
Lal25g0141 263 PRINTS Expansin signature 94 105 IPR002963 GO:0009664
Lal25g0141 263 PRINTS Expansin signature 108 118 IPR002963 GO:0009664
Lal25g0141 263 PRINTS Expansin signature 127 144 IPR002963 GO:0009664
Lal25g0141 263 PRINTS Expansin signature 144 157 IPR002963 GO:0009664
Lal25g0141 263 PRINTS Expansin signature 168 180 IPR002963 GO:0009664
Lal25g0141 263 PRINTS Expansin signature 180 201 IPR002963 GO:0009664
Lal25g0141 263 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Lal25g0141 263 PRINTS Expansin signature 244 260 IPR002963 GO:0009664
Lal25g0141 263 SUPERFAMILY Barwin-like endoglucanases 36 187 IPR036908 -
Lal25g0141 263 Pfam Lytic transglycolase 72 158 IPR009009 -
Lal25g0141 263 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Lal25g0141 263 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Lal25g0141 263 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Lal25g0141 263 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Lal25g0141 263 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Lal25g0141 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Lal25g0141 263 Gene3D - 24 165 IPR036908 -
Lal25g0141 263 PANTHER EXPANSIN-A15 8 262 IPR002963 GO:0009664
Lal25g0141 263 SMART dpbb_1 72 159 IPR007112 -
Lal25g0141 263 Gene3D - 169 261 IPR036749 -
Lal25g0141 263 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Lal25g0141 263 Pfam Expansin C-terminal domain 170 247 IPR007117 -
Lal25g0141 263 PANTHER EXPANSIN 8 262 - -
Lal25g0141 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 169 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0141 Lal-Chr25 886327 890321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0141 7 263 Expansin Gene Family AT2G39700 82.490 8.46e-164 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0141 - - gmx:100811296 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0141 25 886327 890321 Lal25g0141 25 886327 890321 ECH
Lal25g0141 25 886327 890321 Lal6g0282 6 1853604 1855918 ECH
Lal25g0141 25 886327 890321 Lal18g1325 18 15713540 15715012 ECH
Lal1g0322 1 1954767 1956562 Lal25g0141 25 886327 890321 ECH
Lal1g2180 1 23798884 23802473 Lal25g0141 25 886327 890321 ECH
Lal9g1593 9 18300590 18304522 Lal25g0141 25 886327 890321 ECH
Lal2g1842 2 20747588 20750373 Lal25g0141 25 886327 890321 ECH
Lal25g0141 25 886327 890321 Lal1g0322 1 1954767 1956562 PCT
Lal25g0141 25 886327 890321 Lal9g0224 9 1379058 1382124 PCT
Lal1g0322 1 1954767 1956562 Lal25g0141 25 886327 890321 PCT
Lal9g0224 9 1379058 1382124 Lal25g0141 25 886327 890321 PCT