Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0135 ATGAGTTTTGTTTTCAGAGGAAGTAGAGGAGATATAGAAAGTGGATTTTCAGAATATGTTCCTGAAAGAACCACAATGCGTGTTCATTCGGCTCGGCCACATAGCAATTCCCTGGCTCTTCTTATTATAGTTTTATGTCTTTTCATGATATTGAACTCTCCTCAAGCGACACATTATTTTTTGCTATGGCTTGTGCTGGCTTTCTTTGCAATGGCAACAAGCATAAGGATGTACGCAGTGTGTCAACATCTTCAAGCTCAGGCTCAGGCTCATGCTGCTGCAGCCACTGGCTTAATTGGCCATACTGAATTGCGATTTCACGTGCCATCATCGTTAGCAATTGCAACTAGAGGACGGTTGCATGGACTTAGACTTCAGCTTGCACTTATTGACCGTGATTTTGATGAGCTCGATTATGATACTTTGAGATCTCTGGACTCTAATATTGCTTCTACTCTTCCTTCAATGACCGAGGAAGAGATAAATGCCTTGCCTGTTCACACATATAAAGTTGCAGATCCAACAAAGGATGTCACTGCAGGAATAGAATCTTCAAGTGCAGCTGAGATTAAACAAGACCATGAAGGATCAAAGGAGAATTTGCATGGTCCAGAAGATGAGCTTACATGTACTATATGCTTGGACCAAGTTAACACGGGGGAGCTTGTTCGTAGCTTGCCATGCTTGCATCAGTTTCATGCCAACTGCATTGATCCATGGCTTAGGCAACAAGGAACATGTCCAGTGTGTAAATTCAGGATGGGGTTGTTGGGATTGCAGGGAAACAGAGATAGTGAATCTGATGGTTCTGGTTCAGATATTGTGTAG 828 0.4263 MSFVFRGSRGDIESGFSEYVPERTTMRVHSARPHSNSLALLIIVLCLFMILNSPQATHYFLLWLVLAFFAMATSIRMYAVCQHLQAQAQAHAAAATGLIGHTELRFHVPSSLAIATRGRLHGLRLQLALIDRDFDELDYDTLRSLDSNIASTLPSMTEEEINALPVHTYKVADPTKDVTAGIESSSAAEIKQDHEGSKENLHGPEDELTCTICLDQVNTGELVRSLPCLHQFHANCIDPWLRQQGTCPVCKFRMGLLGLQGNRDSESDGSGSDIV 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0135 275 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 270 - -
Lal25g0135 275 SUPERFAMILY RING/U-box 205 255 - -
Lal25g0135 275 Pfam Ring finger domain 209 251 IPR001841 -
Lal25g0135 275 MobiDBLite consensus disorder prediction 188 202 - -
Lal25g0135 275 CDD RING-H2_PA-TM-RING 209 251 - -
Lal25g0135 275 ProSiteProfiles Zinc finger RING-type profile. 210 251 IPR001841 -
Lal25g0135 275 MobiDBLite consensus disorder prediction 183 202 - -
Lal25g0135 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 255 IPR013083 -
Lal25g0135 275 SMART ring_2 210 250 IPR001841 -
Lal25g0135 275 PANTHER TARGET OF ERK KINASE MPK-1 1 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0135 Lal-Chr25 852331 855936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0135 1 275 C3H Transcription Factor Family AT3G55530 64.260 1.14e-114 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0135 K16283 - gmx:100805406 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0135 25 852331 855936 Lal25g0135 25 852331 855936 ECH