Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0134 ATGAACTCAGATATTTTACCCGCTACGGCGTCGTTTTGGTGCTACAGCTGCGCACGCTTCGTTGACCTCATGGACCAACACGACGTGGTTTGCCCCAACTGCCAAAGCGGCTTCGTTGAAGAGATCCACTACTCCAACCAATCGCCGGCGATGTCTCTCTTCGCTGACGGCCTTCAAACACCGAGGAGACAAGGTATCCGCCGGAGACGCCGCAACACCGCTAGACGCTCACCGTTCAATCCAGTCATCGTCCTCCGAGGAGCCGCCGAGGATGGCGCCGCTGGTGGTAATGATGGTAATAGCAGCTTTGAATTGTACTACGACGACGGCGATGGTTCCGGTCTCCGACCTCTGCCACCAACGATGTCGGAGTTTTTGTTAGGGTCAGGTTTCGATCGGTTACTGGAGCAGTTTTCTCAGATCGAGGTCAACGGTTTCGGCCAAATCGGGAACCCGCCAGCGTCAAAGGCGGCGGTGGAGTCGATGCCGACGGTTGAGATCGCGGAACAACACGTTGACGTAGAAACGCACTGTGCGGTGTGCAAAGAAGCTTTCGAGCTAGGTTCTGAGGCGCGTGAGATGCCGTGCAAGCATCTCTACCATTCCGATTGCATCATCCCATGGCTTTCGATGCGAAATTCGTGCCCTGTGTGCCGTCACGAATTACCAGCCGATCAGAATCCGGTGGAAAACAGAATCAACGGTCAGATCGAAGAAGAAGGTGTCGGGTTAATCATATGGCGGTTACCGGGGGGCGGATTCGCCGTCGGGAGATTTACCGGCGGCCAGAGAAACGCAGAGAATAATTTGCCGAGATGGACGGAAGTAGAAATTCGAATGAAGGTTCTAGAAGAATTTCTAGGGAAATTGGAAGCAGTAGAGTTAGGGAGAGGGGTAGAATTGGAAGGTCCAGATCAGTTAGGTCTTCACATTCTTCATCTATGGATAGAAGCCTTAGCCATTGGAGTTCAGTGTTCAATTGGAGAAGCAGAAGAAGTTTGGTGTTGGAAGATTGAGTTCATTATTTTCGAAACTAAATTATTCAGATTCATAATTAAAGTAAATGTACATGCTAGAACATCATTATCATCAGATATTGTTTTGTGTTTGTCTACACTTGTTAAGGTTCCCCATTGTGTGGCCATTTTTGCATAA 1155 0.4978 MNSDILPATASFWCYSCARFVDLMDQHDVVCPNCQSGFVEEIHYSNQSPAMSLFADGLQTPRRQGIRRRRRNTARRSPFNPVIVLRGAAEDGAAGGNDGNSSFELYYDDGDGSGLRPLPPTMSEFLLGSGFDRLLEQFSQIEVNGFGQIGNPPASKAAVESMPTVEIAEQHVDVETHCAVCKEAFELGSEAREMPCKHLYHSDCIIPWLSMRNSCPVCRHELPADQNPVENRINGQIEEEGVGLIIWRLPGGGFAVGRFTGGQRNAENNLPRWTEVEIRMKVLEEFLGKLEAVELGRGVELEGPDQLGLHILHLWIEALAIGVQCSIGEAEEVWCWKIEFIIFETKLFRFIIKVNVHARTSLSSDIVLCLSTLVKVPHCVAIFA 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0134 384 Pfam Protein of unknown function (DUF1117) 242 274 IPR010543 -
Lal25g0134 384 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Lal25g0134 384 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Lal25g0134 384 SUPERFAMILY RING/U-box 158 226 - -
Lal25g0134 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 225 IPR013083 -
Lal25g0134 384 CDD RING-H2_RNF126_like 178 219 - -
Lal25g0134 384 Pfam Ring finger domain 177 219 IPR001841 -
Lal25g0134 384 SMART ring_2 178 218 IPR001841 -
Lal25g0134 384 PANTHER OS05G0110000 PROTEIN 9 277 - -
Lal25g0134 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0134 Lal-Chr25 848074 850695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0134 117 230 C3H Transcription Factor Family AT5G01980 47.368 2.04e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0134 - - aip:107612938 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0134 25 848074 850695 Lal25g0134 25 848074 850695 ECH
Lal25g0134 25 848074 850695 Lal2g0213 2 1253778 1254803 PCT
Lal25g0134 25 848074 850695 Lal9g0218 9 1341125 1342135 PCT
Lal2g0213 2 1253778 1254803 Lal25g0134 25 848074 850695 PCT
Lal9g0218 9 1341125 1342135 Lal25g0134 25 848074 850695 PCT