Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0116 ATGACAGAACATAGGTTGAAGAGGGAACAATTCAACCGCACCAAACATGATTCTAATTTCTCTCCATGGAAGATTCTTATTGGACCAAGTGATTGGGAAGAGTATTGTGAAGGAAAAGAAGGATGTAGAAGATACATGATTCATAACTTGCCTCAAAATTCAGGTGCAGGAGTATATGAGCTTGGTATAGGTGTGTGGAGTAGTGGATTGAGACGTCAAATTTACAAACTTGTCCCTGATCAACATCATAATAATATAGTTGTGGTATACATTGGACAAGCTGATAATGTGAGAGGAAGATTACAACGTTATGGTAGAAATGGAGCTCATTTGGTGAATGCTGATGGTACCCCTTTCTTTAATCACATTTTTTCACTTGGCTACCCTATCCTTTATAGATGGGCTCCTATGGAAAAAAAGGAAGATGCCATCCGAACAGAAGATCAGCTGCTCTGTACATTTGACTATGCTTGGAACACAGGCAATAATGGTACCCGGCGACCTGAGGATATTCTTCAAAAGCTCAACAAAATTGCTTCTGGCACTAGAACATTTTCAGATTTGGCCAAAGTACTTCTACCTTTCACTCAGAGGCAAGTTGGTATCAAAATTAAATCAAGCAAGTTGCCTCTTACAGATGACAACAAATCAGATGAAGGCAATGGCGGCTATAATTTCCTATCTCGAATCTTCAAATTTAACAGATCACGTCCGAGGATAGTTCAGGATATCAATGAAGCCATTCAGGAGAATGATAATAAAATTTGTGGAGTGGCCTTGGGTGATGGTTTTGTTTGTACAAGGTCACCAGCTGAAAGAAGAAAGAGGTGTCCTGAGCACAAAGGAACGAAAATAAACATGTCCATTGCCAAAACATTGAAGACACCCAAGTCGGAAAGCGCTGTGGTACTAGAACCTAATGAGATTTATCAAACAAAGGGTAATCACTATAGAGACCAACATGTTGGCCATGATGTTCAAGACCCTCCACAAAAAGTGGTTGAGATTCCTGCTGATGAGAGTATAAGTAACACAAATATATGTGGAATCATCTTAGATGATGGCTCCACTTGTAGCAGACAACCAGTTAAAGGGAGAAAAAGGTGCCTTGAGCATAAAGGAATGAAAATAAACATGTCCATTGCCAAAATATTGAGGACACCCAAGTCGGAAAGCGCTGTGGTACTAGAACCTAATGAGATTTGTCAAACAAAGGGCAATCGCTACAGAGACCAACATGTTGGCCATGATGTTCAAGACCCTCAACAAAAAGTGGTTGAGATTCCTGCTGATGAGAGTATAAGTAACACAAATATATGTGGAATCATCTTAGATGATGGCTCCACTTGTAACAGACAACCAGTTAAAGGGAGAAAAAGATGCCTTGAGCATAAAGGGATGAAAATAAACATGTCCATTGCCAAAACATTGAGGACACCCAAGTCGGAAAGCGCTGTGGTACTAGAACCTAATGAGATTTGTCAAACAAAGGGCAATTGCTACAGAGACCAACATGTTGGCCATGATGTTCAAGACCCTCAACAAAAAGTGATTGAGATTCCTGCTGATGAGAGTTTAAGTAACACAAATAAATGTGGAATCATCTTGGATGATGGCTCCACTTGTAGCAGACAACCAGTTAAAGGGAGAAAAAGGTGCCTTGAACATAAAGGGAAGAGAAACCGTACACCCGTTTATAGAAATCACCAGTACTAA 1716 0.4009 MTEHRLKREQFNRTKHDSNFSPWKILIGPSDWEEYCEGKEGCRRYMIHNLPQNSGAGVYELGIGVWSSGLRRQIYKLVPDQHHNNIVVVYIGQADNVRGRLQRYGRNGAHLVNADGTPFFNHIFSLGYPILYRWAPMEKKEDAIRTEDQLLCTFDYAWNTGNNGTRRPEDILQKLNKIASGTRTFSDLAKVLLPFTQRQVGIKIKSSKLPLTDDNKSDEGNGGYNFLSRIFKFNRSRPRIVQDINEAIQENDNKICGVALGDGFVCTRSPAERRKRCPEHKGTKINMSIAKTLKTPKSESAVVLEPNEIYQTKGNHYRDQHVGHDVQDPPQKVVEIPADESISNTNICGIILDDGSTCSRQPVKGRKRCLEHKGMKINMSIAKILRTPKSESAVVLEPNEICQTKGNRYRDQHVGHDVQDPQQKVVEIPADESISNTNICGIILDDGSTCNRQPVKGRKRCLEHKGMKINMSIAKTLRTPKSESAVVLEPNEICQTKGNCYRDQHVGHDVQDPQQKVIEIPADESLSNTNKCGIILDDGSTCSRQPVKGRKRCLEHKGKRNRTPVYRNHQY 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0116 571 CDD GIY-YIG_SF 88 119 - -
Lal25g0116 571 Pfam GIY-YIG domain-containing protein 20 172 - -
Lal25g0116 571 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 515 563 IPR038909 GO:0003677|GO:0006355
Lal25g0116 571 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 3 394 IPR038909 GO:0003677|GO:0006355
Lal25g0116 571 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 422 487 IPR038909 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0116 347 560 HRT Transcription Factor Family AT5G56780 31.950 1.30e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Lal25g0116 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0116 - - lang:109350609 849.351