Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0107 ATGACATTTCGATTACGTGCATTGCGGAGAATGGAATCGGAGAATTTGGTGAAACAAGAATTGGAGGAATTGCAGAAACAATTGGGGAAAAAGCAACAGTTCGAAAGCGCTGTCTCATCTCTTAAATCTCTTCTCCAACGGTCATACCAATCCGCTTCTCCCTCTCTTCGAAAATCTTTTTATTCAGTTATATGCCGAGTTTCTACTGTGTTGAAGACCAGGTATACAGCACCAGGTTTCTGGAATGCTGGCCTGGGCCTTTTTGAGCAGGCTAATATGCTTGTTTCTGAACCTTCGGAGAAGCAGCACTTGAAGGCTTGCATTGCTCAGGCCAGGGAACATTTGCATCTAGAAGACAACCCATCACAACCTTTGCGGCCACGGCAGAGTCATACAAATGGAGGGTATCTTTTTGAGGGGCACCTTACTGTTGATCCGGAGCCACCTCAGCCTCAATGGTTGGTGCAAGAAAACCTCTTGTCAACAGCTGCTACTCTATTTGCTGCTGAAACCTCTCAAGGTTCAGGAGCAAATGATACCACGCCAGAGAACACTGCCAATGTGCTTCAAGAGCTTTTAACTAGGTTGGAAGAAGTTGTACCTCTGATGGTGGATGATGGTCCTGTAGCTCCAAGAGTACCTCCTGCCAGTAAAGAAGTTGTGGCAAAACTTCCGGTCATTACTCTCACGGAGGAAATCCTGGCTAAGCTGGGGAAAGATGCAGAGTGTGCAATTTGCAGGGAAGACTTGGTTTTAAATGACAAAATGCAAGAGTTGCCTTGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGGATGAGCACAATTCTTGTCCGATCTGTCGGTATGAGCTACAAACTGATGATCACGCCTATGAAAGCTGGAAGGAACGTGAAAAGGAAGCTGAAGAAGAGAGGAAAGGTGCAGAAAATGCCATTCGAGGCGGTGAATATATGTATGTTTAG 972 0.4599 MTFRLRALRRMESENLVKQELEELQKQLGKKQQFESAVSSLKSLLQRSYQSASPSLRKSFYSVICRVSTVLKTRYTAPGFWNAGLGLFEQANMLVSEPSEKQHLKACIAQAREHLHLEDNPSQPLRPRQSHTNGGYLFEGHLTVDPEPPQPQWLVQENLLSTAATLFAAETSQGSGANDTTPENTANVLQELLTRLEEVVPLMVDDGPVAPRVPPASKEVVAKLPVITLTEEILAKLGKDAECAICREDLVLNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAENAIRGGEYMYV 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0107 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 290 IPR013083 -
Lal25g0107 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 16 317 - -
Lal25g0107 323 SUPERFAMILY RING/U-box 237 290 - -
Lal25g0107 323 Pfam Ring finger domain 242 284 IPR001841 -
Lal25g0107 323 ProSiteProfiles Zinc finger RING-type profile. 243 284 IPR001841 -
Lal25g0107 323 SMART ring_2 243 283 IPR001841 -
Lal25g0107 323 MobiDBLite consensus disorder prediction 118 138 - -
Lal25g0107 323 Coils Coil 294 314 - -
Lal25g0107 323 PANTHER ABI3-INTERACTING PROTEIN 2-1 16 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0107 Lal-Chr25 696502 699383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0107 17 323 C3H Transcription Factor Family AT5G20910 65.798 2.13e-135 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0107 K16274 - gmx:100798732 529.25